miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 17935 1.12 0.000182
Target:  5'- gCGCCAGCCCCUACGACUUCCUGGCGCa -3'
miRNA:   3'- -GCGGUCGGGGAUGCUGAAGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 4113 0.76 0.088152
Target:  5'- cCGCCAGCCUgcgCUGCagcguuGCUUCCcGGCGCa -3'
miRNA:   3'- -GCGGUCGGG---GAUGc-----UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14990 0.76 0.090682
Target:  5'- gCGCCAGggCCUGCGGCcgCCgGGCGCg -3'
miRNA:   3'- -GCGGUCggGGAUGCUGaaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 37989 0.73 0.149673
Target:  5'- uGCCA-CCgCUgGCGGCUUCCcccUGGCGCg -3'
miRNA:   3'- gCGGUcGGgGA-UGCUGAAGG---ACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 29132 0.73 0.149673
Target:  5'- aCGCCGGCCCCgGCGcGCUgCaaucGGCGCu -3'
miRNA:   3'- -GCGGUCGGGGaUGC-UGAaGga--CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 39888 0.72 0.171431
Target:  5'- aGCgCGGCCCCUaccGCGAaUUCCUGGUc- -3'
miRNA:   3'- gCG-GUCGGGGA---UGCUgAAGGACCGcg -5'
26514 5' -59.3 NC_005357.1 + 26743 0.72 0.166865
Target:  5'- cCGCCAgcgcGCCCgCUGCGAU-UCCauaaGGCGCa -3'
miRNA:   3'- -GCGGU----CGGG-GAUGCUGaAGGa---CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 21807 0.71 0.206619
Target:  5'- gCGCaGGCCgacaccgaCCUGCGACgccgCCUGGCGa -3'
miRNA:   3'- -GCGgUCGG--------GGAUGCUGaa--GGACCGCg -5'
26514 5' -59.3 NC_005357.1 + 31957 0.71 0.217763
Target:  5'- gGCCGGUgCUgcGCGACUUCCagGGCGa -3'
miRNA:   3'- gCGGUCGgGGa-UGCUGAAGGa-CCGCg -5'
26514 5' -59.3 NC_005357.1 + 41073 0.71 0.212128
Target:  5'- uCGCCggaugcgcaaGGCCgCCgaccACGGCUUCCUcGCGCu -3'
miRNA:   3'- -GCGG----------UCGG-GGa---UGCUGAAGGAcCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14212 0.71 0.217763
Target:  5'- gGUCAGgCgCagcGCGGCUUCCuUGGCGCg -3'
miRNA:   3'- gCGGUCgGgGa--UGCUGAAGG-ACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 36917 0.7 0.254305
Target:  5'- gGCCGGCgugCCUACGACUU--UGGCaGCa -3'
miRNA:   3'- gCGGUCGg--GGAUGCUGAAggACCG-CG- -5'
26514 5' -59.3 NC_005357.1 + 32834 0.7 0.223526
Target:  5'- -aCCAGCCgCaACGGCUucgCCUGGcCGCa -3'
miRNA:   3'- gcGGUCGGgGaUGCUGAa--GGACC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 27074 0.7 0.241594
Target:  5'- gCGUCAGCCCCUGCuGGucgaaaacCUaCCgGGUGCa -3'
miRNA:   3'- -GCGGUCGGGGAUG-CU--------GAaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 19134 0.69 0.28848
Target:  5'- uGCCGGCCgCaaacaGGCaUUCgUGGCGCa -3'
miRNA:   3'- gCGGUCGGgGaug--CUG-AAGgACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 38034 0.69 0.260864
Target:  5'- aCGCUcaaGGCCCggcGCGACggcgCCUGGCuGCg -3'
miRNA:   3'- -GCGG---UCGGGga-UGCUGaa--GGACCG-CG- -5'
26514 5' -59.3 NC_005357.1 + 23904 0.69 0.28848
Target:  5'- gCGCCAcGCCC--GCGGCUUCCaugccggcauaGGCGUg -3'
miRNA:   3'- -GCGGU-CGGGgaUGCUGAAGGa----------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 40730 0.69 0.259541
Target:  5'- aCGCCGGCCCaCggcgaauuucuCGACUaCCUG-CGCg -3'
miRNA:   3'- -GCGGUCGGG-Gau---------GCUGAaGGACcGCG- -5'
26514 5' -59.3 NC_005357.1 + 38622 0.69 0.274394
Target:  5'- gCGCCuGCCCaacuacaACGAaUUCCaGGCGCu -3'
miRNA:   3'- -GCGGuCGGGga-----UGCUgAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 13447 0.68 0.303128
Target:  5'- cCGCCAGCUUg-GCGGCcUCg-GGCGCg -3'
miRNA:   3'- -GCGGUCGGGgaUGCUGaAGgaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.