Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26514 | 5' | -59.3 | NC_005357.1 | + | 17935 | 1.12 | 0.000182 |
Target: 5'- gCGCCAGCCCCUACGACUUCCUGGCGCa -3' miRNA: 3'- -GCGGUCGGGGAUGCUGAAGGACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 4113 | 0.76 | 0.088152 |
Target: 5'- cCGCCAGCCUgcgCUGCagcguuGCUUCCcGGCGCa -3' miRNA: 3'- -GCGGUCGGG---GAUGc-----UGAAGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 14990 | 0.76 | 0.090682 |
Target: 5'- gCGCCAGggCCUGCGGCcgCCgGGCGCg -3' miRNA: 3'- -GCGGUCggGGAUGCUGaaGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 29132 | 0.73 | 0.149673 |
Target: 5'- aCGCCGGCCCCgGCGcGCUgCaaucGGCGCu -3' miRNA: 3'- -GCGGUCGGGGaUGC-UGAaGga--CCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 37989 | 0.73 | 0.149673 |
Target: 5'- uGCCA-CCgCUgGCGGCUUCCcccUGGCGCg -3' miRNA: 3'- gCGGUcGGgGA-UGCUGAAGG---ACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 26743 | 0.72 | 0.166865 |
Target: 5'- cCGCCAgcgcGCCCgCUGCGAU-UCCauaaGGCGCa -3' miRNA: 3'- -GCGGU----CGGG-GAUGCUGaAGGa---CCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 39888 | 0.72 | 0.171431 |
Target: 5'- aGCgCGGCCCCUaccGCGAaUUCCUGGUc- -3' miRNA: 3'- gCG-GUCGGGGA---UGCUgAAGGACCGcg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 21807 | 0.71 | 0.206619 |
Target: 5'- gCGCaGGCCgacaccgaCCUGCGACgccgCCUGGCGa -3' miRNA: 3'- -GCGgUCGG--------GGAUGCUGaa--GGACCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 41073 | 0.71 | 0.212128 |
Target: 5'- uCGCCggaugcgcaaGGCCgCCgaccACGGCUUCCUcGCGCu -3' miRNA: 3'- -GCGG----------UCGG-GGa---UGCUGAAGGAcCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 14212 | 0.71 | 0.217763 |
Target: 5'- gGUCAGgCgCagcGCGGCUUCCuUGGCGCg -3' miRNA: 3'- gCGGUCgGgGa--UGCUGAAGG-ACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 31957 | 0.71 | 0.217763 |
Target: 5'- gGCCGGUgCUgcGCGACUUCCagGGCGa -3' miRNA: 3'- gCGGUCGgGGa-UGCUGAAGGa-CCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 32834 | 0.7 | 0.223526 |
Target: 5'- -aCCAGCCgCaACGGCUucgCCUGGcCGCa -3' miRNA: 3'- gcGGUCGGgGaUGCUGAa--GGACC-GCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 27074 | 0.7 | 0.241594 |
Target: 5'- gCGUCAGCCCCUGCuGGucgaaaacCUaCCgGGUGCa -3' miRNA: 3'- -GCGGUCGGGGAUG-CU--------GAaGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 36917 | 0.7 | 0.254305 |
Target: 5'- gGCCGGCgugCCUACGACUU--UGGCaGCa -3' miRNA: 3'- gCGGUCGg--GGAUGCUGAAggACCG-CG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 40730 | 0.69 | 0.259541 |
Target: 5'- aCGCCGGCCCaCggcgaauuucuCGACUaCCUG-CGCg -3' miRNA: 3'- -GCGGUCGGG-Gau---------GCUGAaGGACcGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 38034 | 0.69 | 0.260864 |
Target: 5'- aCGCUcaaGGCCCggcGCGACggcgCCUGGCuGCg -3' miRNA: 3'- -GCGG---UCGGGga-UGCUGaa--GGACCG-CG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 38622 | 0.69 | 0.274394 |
Target: 5'- gCGCCuGCCCaacuacaACGAaUUCCaGGCGCu -3' miRNA: 3'- -GCGGuCGGGga-----UGCUgAAGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 19134 | 0.69 | 0.28848 |
Target: 5'- uGCCGGCCgCaaacaGGCaUUCgUGGCGCa -3' miRNA: 3'- gCGGUCGGgGaug--CUG-AAGgACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 23904 | 0.69 | 0.28848 |
Target: 5'- gCGCCAcGCCC--GCGGCUUCCaugccggcauaGGCGUg -3' miRNA: 3'- -GCGGU-CGGGgaUGCUGAAGGa----------CCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 13447 | 0.68 | 0.303128 |
Target: 5'- cCGCCAGCUUg-GCGGCcUCg-GGCGCg -3' miRNA: 3'- -GCGGUCGGGgaUGCUGaAGgaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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