miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 13447 0.68 0.303128
Target:  5'- cCGCCAGCUUg-GCGGCcUCg-GGCGCg -3'
miRNA:   3'- -GCGGUCGGGgaUGCUGaAGgaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 7264 0.68 0.318342
Target:  5'- uCGCCGGCCUUgUGCaGCUUCUcGGCGg -3'
miRNA:   3'- -GCGGUCGGGG-AUGcUGAAGGaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 20084 0.68 0.326161
Target:  5'- uGuCCAGUUCCUugGCGACUUCggaaaaGGCGCc -3'
miRNA:   3'- gC-GGUCGGGGA--UGCUGAAGga----CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 9276 0.68 0.342225
Target:  5'- gGUCGGCCCgguacaccggCUGCgcauuGACUUCCUcggcgaccuggcGGCGCa -3'
miRNA:   3'- gCGGUCGGG----------GAUG-----CUGAAGGA------------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 36347 0.68 0.342225
Target:  5'- gGCCGcGCUCg-ACGACUUCgaGGCGg -3'
miRNA:   3'- gCGGU-CGGGgaUGCUGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 364 0.67 0.351301
Target:  5'- cCGCCAGgCCCgagaacacgaaauagACGAUgcCCagGGCGCc -3'
miRNA:   3'- -GCGGUCgGGGa--------------UGCUGaaGGa-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 12300 0.67 0.358852
Target:  5'- uGCaGGCCg--GCGGCgugUUCUGGCGCg -3'
miRNA:   3'- gCGgUCGGggaUGCUGa--AGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 671 0.67 0.376036
Target:  5'- aGCCaccaGGCCgCCUACGGCggcgCCggccgGGcCGCc -3'
miRNA:   3'- gCGG----UCGG-GGAUGCUGaa--GGa----CC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 23069 0.67 0.384833
Target:  5'- gGCCGaCCUCaACGGCaauuccgccgCCUGGCGCc -3'
miRNA:   3'- gCGGUcGGGGaUGCUGaa--------GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 41752 0.67 0.393766
Target:  5'- gGCCGGCgCCgccguaGGCggCCUGGUGg -3'
miRNA:   3'- gCGGUCGgGGaug---CUGaaGGACCGCg -5'
26514 5' -59.3 NC_005357.1 + 29303 0.67 0.393766
Target:  5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3'
miRNA:   3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 24145 0.66 0.40192
Target:  5'- uCGCCAccgGCCCgCUgACGGCcggcaagUUCUcGGCGCa -3'
miRNA:   3'- -GCGGU---CGGG-GA-UGCUG-------AAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27422 0.66 0.402832
Target:  5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3'
miRNA:   3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 10116 0.66 0.402832
Target:  5'- aCGCCGGCCUUgaugGCGGCgaUgaGGuCGCg -3'
miRNA:   3'- -GCGGUCGGGGa---UGCUGaaGgaCC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 16602 0.66 0.402832
Target:  5'- uGaCCGGCgCCaACGGCggCCcGGUGCa -3'
miRNA:   3'- gC-GGUCGgGGaUGCUGaaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 5101 0.66 0.41203
Target:  5'- gGCCGGCCCa-GCGuccgguGCgg-CUGGCGCc -3'
miRNA:   3'- gCGGUCGGGgaUGC------UGaagGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 22948 0.66 0.41203
Target:  5'- gGCCuGCCac--CGGCa-CCUGGCGCa -3'
miRNA:   3'- gCGGuCGGggauGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27502 0.66 0.421356
Target:  5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3'
miRNA:   3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 12747 0.66 0.421356
Target:  5'- uGCCGcGCCCa---GACg-CUUGGCGCg -3'
miRNA:   3'- gCGGU-CGGGgaugCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14617 0.66 0.421356
Target:  5'- gCGUCGGCUUCcAUG-CUUCC-GGCGCc -3'
miRNA:   3'- -GCGGUCGGGGaUGCuGAAGGaCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.