miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 16602 0.66 0.402832
Target:  5'- uGaCCGGCgCCaACGGCggCCcGGUGCa -3'
miRNA:   3'- gC-GGUCGgGGaUGCUGaaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 24145 0.66 0.40192
Target:  5'- uCGCCAccgGCCCgCUgACGGCcggcaagUUCUcGGCGCa -3'
miRNA:   3'- -GCGGU---CGGG-GA-UGCUG-------AAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 29303 0.67 0.393766
Target:  5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3'
miRNA:   3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 41752 0.67 0.393766
Target:  5'- gGCCGGCgCCgccguaGGCggCCUGGUGg -3'
miRNA:   3'- gCGGUCGgGGaug---CUGaaGGACCGCg -5'
26514 5' -59.3 NC_005357.1 + 23069 0.67 0.384833
Target:  5'- gGCCGaCCUCaACGGCaauuccgccgCCUGGCGCc -3'
miRNA:   3'- gCGGUcGGGGaUGCUGaa--------GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 671 0.67 0.376036
Target:  5'- aGCCaccaGGCCgCCUACGGCggcgCCggccgGGcCGCc -3'
miRNA:   3'- gCGG----UCGG-GGAUGCUGaa--GGa----CC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 12300 0.67 0.358852
Target:  5'- uGCaGGCCg--GCGGCgugUUCUGGCGCg -3'
miRNA:   3'- gCGgUCGGggaUGCUGa--AGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 364 0.67 0.351301
Target:  5'- cCGCCAGgCCCgagaacacgaaauagACGAUgcCCagGGCGCc -3'
miRNA:   3'- -GCGGUCgGGGa--------------UGCUGaaGGa-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 9276 0.68 0.342225
Target:  5'- gGUCGGCCCgguacaccggCUGCgcauuGACUUCCUcggcgaccuggcGGCGCa -3'
miRNA:   3'- gCGGUCGGG----------GAUG-----CUGAAGGA------------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 36347 0.68 0.342225
Target:  5'- gGCCGcGCUCg-ACGACUUCgaGGCGg -3'
miRNA:   3'- gCGGU-CGGGgaUGCUGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 20084 0.68 0.326161
Target:  5'- uGuCCAGUUCCUugGCGACUUCggaaaaGGCGCc -3'
miRNA:   3'- gC-GGUCGGGGA--UGCUGAAGga----CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 7264 0.68 0.318342
Target:  5'- uCGCCGGCCUUgUGCaGCUUCUcGGCGg -3'
miRNA:   3'- -GCGGUCGGGG-AUGcUGAAGGaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 1763 0.68 0.303128
Target:  5'- gGCCGGCCU--GCG----CCUGGCGCg -3'
miRNA:   3'- gCGGUCGGGgaUGCugaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 13447 0.68 0.303128
Target:  5'- cCGCCAGCUUg-GCGGCcUCg-GGCGCg -3'
miRNA:   3'- -GCGGUCGGGgaUGCUGaAGgaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 19134 0.69 0.28848
Target:  5'- uGCCGGCCgCaaacaGGCaUUCgUGGCGCa -3'
miRNA:   3'- gCGGUCGGgGaug--CUG-AAGgACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 23904 0.69 0.28848
Target:  5'- gCGCCAcGCCC--GCGGCUUCCaugccggcauaGGCGUg -3'
miRNA:   3'- -GCGGU-CGGGgaUGCUGAAGGa----------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 38622 0.69 0.274394
Target:  5'- gCGCCuGCCCaacuacaACGAaUUCCaGGCGCu -3'
miRNA:   3'- -GCGGuCGGGga-----UGCUgAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 38034 0.69 0.260864
Target:  5'- aCGCUcaaGGCCCggcGCGACggcgCCUGGCuGCg -3'
miRNA:   3'- -GCGG---UCGGGga-UGCUGaa--GGACCG-CG- -5'
26514 5' -59.3 NC_005357.1 + 40730 0.69 0.259541
Target:  5'- aCGCCGGCCCaCggcgaauuucuCGACUaCCUG-CGCg -3'
miRNA:   3'- -GCGGUCGGG-Gau---------GCUGAaGGACcGCG- -5'
26514 5' -59.3 NC_005357.1 + 36917 0.7 0.254305
Target:  5'- gGCCGGCgugCCUACGACUU--UGGCaGCa -3'
miRNA:   3'- gCGGUCGg--GGAUGCUGAAggACCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.