miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 18521 0.66 0.440384
Target:  5'- uGCCGGCauggaagCCgcgggcgugGCGcACUUCCUuGGCGUa -3'
miRNA:   3'- gCGGUCGg------GGa--------UGC-UGAAGGA-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 19134 0.69 0.28848
Target:  5'- uGCCGGCCgCaaacaGGCaUUCgUGGCGCa -3'
miRNA:   3'- gCGGUCGGgGaug--CUG-AAGgACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 20084 0.68 0.326161
Target:  5'- uGuCCAGUUCCUugGCGACUUCggaaaaGGCGCc -3'
miRNA:   3'- gC-GGUCGGGGA--UGCUGAAGga----CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 21807 0.71 0.206619
Target:  5'- gCGCaGGCCgacaccgaCCUGCGACgccgCCUGGCGa -3'
miRNA:   3'- -GCGgUCGG--------GGAUGCUGaa--GGACCGCg -5'
26514 5' -59.3 NC_005357.1 + 22948 0.66 0.41203
Target:  5'- gGCCuGCCac--CGGCa-CCUGGCGCa -3'
miRNA:   3'- gCGGuCGGggauGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 23069 0.67 0.384833
Target:  5'- gGCCGaCCUCaACGGCaauuccgccgCCUGGCGCc -3'
miRNA:   3'- gCGGUcGGGGaUGCUGaa--------GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 23904 0.69 0.28848
Target:  5'- gCGCCAcGCCC--GCGGCUUCCaugccggcauaGGCGUg -3'
miRNA:   3'- -GCGGU-CGGGgaUGCUGAAGGa----------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 24145 0.66 0.40192
Target:  5'- uCGCCAccgGCCCgCUgACGGCcggcaagUUCUcGGCGCa -3'
miRNA:   3'- -GCGGU---CGGG-GA-UGCUG-------AAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 25631 0.66 0.45008
Target:  5'- uCGCCAGCagcgcguccaCCUcgGCGAgUUCUgccGGCGUc -3'
miRNA:   3'- -GCGGUCGg---------GGA--UGCUgAAGGa--CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 25713 0.66 0.45008
Target:  5'- -aCCAGCCCC-GCGGCggggucgucgUCCUcaccGGCGg -3'
miRNA:   3'- gcGGUCGGGGaUGCUGa---------AGGA----CCGCg -5'
26514 5' -59.3 NC_005357.1 + 26743 0.72 0.166865
Target:  5'- cCGCCAgcgcGCCCgCUGCGAU-UCCauaaGGCGCa -3'
miRNA:   3'- -GCGGU----CGGG-GAUGCUGaAGGa---CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27074 0.7 0.241594
Target:  5'- gCGUCAGCCCCUGCuGGucgaaaacCUaCCgGGUGCa -3'
miRNA:   3'- -GCGGUCGGGGAUG-CU--------GAaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27422 0.66 0.402832
Target:  5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3'
miRNA:   3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27502 0.66 0.421356
Target:  5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3'
miRNA:   3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27589 0.66 0.45008
Target:  5'- gCGCUGGCCgCCaACGGCaucgaCCUGG-GCg -3'
miRNA:   3'- -GCGGUCGG-GGaUGCUGaa---GGACCgCG- -5'
26514 5' -59.3 NC_005357.1 + 27686 0.66 0.45008
Target:  5'- gCGCCAauGCUgcgcguacugCCUGgGGCUaCCgGGCGCa -3'
miRNA:   3'- -GCGGU--CGG----------GGAUgCUGAaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 29132 0.73 0.149673
Target:  5'- aCGCCGGCCCCgGCGcGCUgCaaucGGCGCu -3'
miRNA:   3'- -GCGGUCGGGGaUGC-UGAaGga--CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 29303 0.67 0.393766
Target:  5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3'
miRNA:   3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 31957 0.71 0.217763
Target:  5'- gGCCGGUgCUgcGCGACUUCCagGGCGa -3'
miRNA:   3'- gCGGUCGgGGa-UGCUGAAGGa-CCGCg -5'
26514 5' -59.3 NC_005357.1 + 32360 0.66 0.430809
Target:  5'- gGCUcGCCCCgACGACg-CCUcGGaCGCu -3'
miRNA:   3'- gCGGuCGGGGaUGCUGaaGGA-CC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.