Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26514 | 5' | -59.3 | NC_005357.1 | + | 42273 | 0.66 | 0.421356 |
Target: 5'- gGCgCAuCCgCCUGCGGggaagCCUGGCGCc -3' miRNA: 3'- gCG-GUcGG-GGAUGCUgaa--GGACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 41752 | 0.67 | 0.393766 |
Target: 5'- gGCCGGCgCCgccguaGGCggCCUGGUGg -3' miRNA: 3'- gCGGUCGgGGaug---CUGaaGGACCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 41073 | 0.71 | 0.212128 |
Target: 5'- uCGCCggaugcgcaaGGCCgCCgaccACGGCUUCCUcGCGCu -3' miRNA: 3'- -GCGG----------UCGG-GGa---UGCUGAAGGAcCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 40730 | 0.69 | 0.259541 |
Target: 5'- aCGCCGGCCCaCggcgaauuucuCGACUaCCUG-CGCg -3' miRNA: 3'- -GCGGUCGGG-Gau---------GCUGAaGGACcGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 39888 | 0.72 | 0.171431 |
Target: 5'- aGCgCGGCCCCUaccGCGAaUUCCUGGUc- -3' miRNA: 3'- gCG-GUCGGGGA---UGCUgAAGGACCGcg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 38622 | 0.69 | 0.274394 |
Target: 5'- gCGCCuGCCCaacuacaACGAaUUCCaGGCGCu -3' miRNA: 3'- -GCGGuCGGGga-----UGCUgAAGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 38034 | 0.69 | 0.260864 |
Target: 5'- aCGCUcaaGGCCCggcGCGACggcgCCUGGCuGCg -3' miRNA: 3'- -GCGG---UCGGGga-UGCUGaa--GGACCG-CG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 37989 | 0.73 | 0.149673 |
Target: 5'- uGCCA-CCgCUgGCGGCUUCCcccUGGCGCg -3' miRNA: 3'- gCGGUcGGgGA-UGCUGAAGG---ACCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 36917 | 0.7 | 0.254305 |
Target: 5'- gGCCGGCgugCCUACGACUU--UGGCaGCa -3' miRNA: 3'- gCGGUCGg--GGAUGCUGAAggACCG-CG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 36347 | 0.68 | 0.342225 |
Target: 5'- gGCCGcGCUCg-ACGACUUCgaGGCGg -3' miRNA: 3'- gCGGU-CGGGgaUGCUGAAGgaCCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 34739 | 0.66 | 0.448131 |
Target: 5'- aGCCGGCCgCCgaggucaagccCGACgaCCUGGCc- -3' miRNA: 3'- gCGGUCGG-GGau---------GCUGaaGGACCGcg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 32834 | 0.7 | 0.223526 |
Target: 5'- -aCCAGCCgCaACGGCUucgCCUGGcCGCa -3' miRNA: 3'- gcGGUCGGgGaUGCUGAa--GGACC-GCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 32707 | 0.66 | 0.440384 |
Target: 5'- aGUUcGCCC--GCGGCUUCgaGGCGUa -3' miRNA: 3'- gCGGuCGGGgaUGCUGAAGgaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 32360 | 0.66 | 0.430809 |
Target: 5'- gGCUcGCCCCgACGACg-CCUcGGaCGCu -3' miRNA: 3'- gCGGuCGGGGaUGCUGaaGGA-CC-GCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 31957 | 0.71 | 0.217763 |
Target: 5'- gGCCGGUgCUgcGCGACUUCCagGGCGa -3' miRNA: 3'- gCGGUCGgGGa-UGCUGAAGGa-CCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 29303 | 0.67 | 0.393766 |
Target: 5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3' miRNA: 3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 29132 | 0.73 | 0.149673 |
Target: 5'- aCGCCGGCCCCgGCGcGCUgCaaucGGCGCu -3' miRNA: 3'- -GCGGUCGGGGaUGC-UGAaGga--CCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 27686 | 0.66 | 0.45008 |
Target: 5'- gCGCCAauGCUgcgcguacugCCUGgGGCUaCCgGGCGCa -3' miRNA: 3'- -GCGGU--CGG----------GGAUgCUGAaGGaCCGCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 27589 | 0.66 | 0.45008 |
Target: 5'- gCGCUGGCCgCCaACGGCaucgaCCUGG-GCg -3' miRNA: 3'- -GCGGUCGG-GGaUGCUGaa---GGACCgCG- -5' |
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26514 | 5' | -59.3 | NC_005357.1 | + | 27502 | 0.66 | 0.421356 |
Target: 5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3' miRNA: 3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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