miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 34739 0.66 0.448131
Target:  5'- aGCCGGCCgCCgaggucaagccCGACgaCCUGGCc- -3'
miRNA:   3'- gCGGUCGG-GGau---------GCUGaaGGACCGcg -5'
26514 5' -59.3 NC_005357.1 + 671 0.67 0.376036
Target:  5'- aGCCaccaGGCCgCCUACGGCggcgCCggccgGGcCGCc -3'
miRNA:   3'- gCGG----UCGG-GGAUGCUGaa--GGa----CC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 29303 0.67 0.393766
Target:  5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3'
miRNA:   3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 27422 0.66 0.402832
Target:  5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3'
miRNA:   3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 12747 0.66 0.421356
Target:  5'- uGCCGcGCCCa---GACg-CUUGGCGCg -3'
miRNA:   3'- gCGGU-CGGGgaugCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14617 0.66 0.421356
Target:  5'- gCGUCGGCUUCcAUG-CUUCC-GGCGCc -3'
miRNA:   3'- -GCGGUCGGGGaUGCuGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27502 0.66 0.421356
Target:  5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3'
miRNA:   3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 6400 0.66 0.440384
Target:  5'- gGCCGGCCCgguguagucGCGGCccaugUCgUUGGCGCc -3'
miRNA:   3'- gCGGUCGGGga-------UGCUGa----AG-GACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 9169 0.66 0.440384
Target:  5'- gGCCGGCa---GCGACaaCUUGGCGCc -3'
miRNA:   3'- gCGGUCGgggaUGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 364 0.67 0.351301
Target:  5'- cCGCCAGgCCCgagaacacgaaauagACGAUgcCCagGGCGCc -3'
miRNA:   3'- -GCGGUCgGGGa--------------UGCUGaaGGa-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 36347 0.68 0.342225
Target:  5'- gGCCGcGCUCg-ACGACUUCgaGGCGg -3'
miRNA:   3'- gCGGU-CGGGgaUGCUGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 9276 0.68 0.342225
Target:  5'- gGUCGGCCCgguacaccggCUGCgcauuGACUUCCUcggcgaccuggcGGCGCa -3'
miRNA:   3'- gCGGUCGGG----------GAUG-----CUGAAGGA------------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 26743 0.72 0.166865
Target:  5'- cCGCCAgcgcGCCCgCUGCGAU-UCCauaaGGCGCa -3'
miRNA:   3'- -GCGGU----CGGG-GAUGCUGaAGGa---CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14212 0.71 0.217763
Target:  5'- gGUCAGgCgCagcGCGGCUUCCuUGGCGCg -3'
miRNA:   3'- gCGGUCgGgGa--UGCUGAAGG-ACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 32834 0.7 0.223526
Target:  5'- -aCCAGCCgCaACGGCUucgCCUGGcCGCa -3'
miRNA:   3'- gcGGUCGGgGaUGCUGAa--GGACC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 27074 0.7 0.241594
Target:  5'- gCGUCAGCCCCUGCuGGucgaaaacCUaCCgGGUGCa -3'
miRNA:   3'- -GCGGUCGGGGAUG-CU--------GAaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 38034 0.69 0.260864
Target:  5'- aCGCUcaaGGCCCggcGCGACggcgCCUGGCuGCg -3'
miRNA:   3'- -GCGG---UCGGGga-UGCUGaa--GGACCG-CG- -5'
26514 5' -59.3 NC_005357.1 + 23904 0.69 0.28848
Target:  5'- gCGCCAcGCCC--GCGGCUUCCaugccggcauaGGCGUg -3'
miRNA:   3'- -GCGGU-CGGGgaUGCUGAAGGa----------CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 13447 0.68 0.303128
Target:  5'- cCGCCAGCUUg-GCGGCcUCg-GGCGCg -3'
miRNA:   3'- -GCGGUCGGGgaUGCUGaAGgaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 20084 0.68 0.326161
Target:  5'- uGuCCAGUUCCUugGCGACUUCggaaaaGGCGCc -3'
miRNA:   3'- gC-GGUCGGGGA--UGCUGAAGga----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.