miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 364 0.67 0.351301
Target:  5'- cCGCCAGgCCCgagaacacgaaauagACGAUgcCCagGGCGCc -3'
miRNA:   3'- -GCGGUCgGGGa--------------UGCUGaaGGa-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 671 0.67 0.376036
Target:  5'- aGCCaccaGGCCgCCUACGGCggcgCCggccgGGcCGCc -3'
miRNA:   3'- gCGG----UCGG-GGAUGCUGaa--GGa----CC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 25713 0.66 0.45008
Target:  5'- -aCCAGCCCC-GCGGCggggucgucgUCCUcaccGGCGg -3'
miRNA:   3'- gcGGUCGGGGaUGCUGa---------AGGA----CCGCg -5'
26514 5' -59.3 NC_005357.1 + 25631 0.66 0.45008
Target:  5'- uCGCCAGCagcgcguccaCCUcgGCGAgUUCUgccGGCGUc -3'
miRNA:   3'- -GCGGUCGg---------GGA--UGCUgAAGGa--CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 9169 0.66 0.440384
Target:  5'- gGCCGGCa---GCGACaaCUUGGCGCc -3'
miRNA:   3'- gCGGUCGgggaUGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 34739 0.66 0.448131
Target:  5'- aGCCGGCCgCCgaggucaagccCGACgaCCUGGCc- -3'
miRNA:   3'- gCGGUCGG-GGau---------GCUGaaGGACCGcg -5'
26514 5' -59.3 NC_005357.1 + 6400 0.66 0.440384
Target:  5'- gGCCGGCCCgguguagucGCGGCccaugUCgUUGGCGCc -3'
miRNA:   3'- gCGGUCGGGga-------UGCUGa----AG-GACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27502 0.66 0.421356
Target:  5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3'
miRNA:   3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14617 0.66 0.421356
Target:  5'- gCGUCGGCUUCcAUG-CUUCC-GGCGCc -3'
miRNA:   3'- -GCGGUCGGGGaUGCuGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 12747 0.66 0.421356
Target:  5'- uGCCGcGCCCa---GACg-CUUGGCGCg -3'
miRNA:   3'- gCGGU-CGGGgaugCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27422 0.66 0.402832
Target:  5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3'
miRNA:   3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 29303 0.67 0.393766
Target:  5'- uGCUGGCCCUUGCccagcACUUCaaGGCGg -3'
miRNA:   3'- gCGGUCGGGGAUGc----UGAAGgaCCGCg -5'
26514 5' -59.3 NC_005357.1 + 4113 0.76 0.088152
Target:  5'- cCGCCAGCCUgcgCUGCagcguuGCUUCCcGGCGCa -3'
miRNA:   3'- -GCGGUCGGG---GAUGc-----UGAAGGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.