miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 29250 0.66 0.396701
Target:  5'- cGGcCAAGGGCGC-CCaGcGCGG-CCGACa -3'
miRNA:   3'- -CC-GUUCCUGUGcGGcC-UGCCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 6074 0.66 0.396701
Target:  5'- uGCAGGGAUACgGCCccGCGaCCCGAUc -3'
miRNA:   3'- cCGUUCCUGUG-CGGccUGCcGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 27964 0.66 0.387864
Target:  5'- uGGCGA--GCACGUccuCGGugGGCUgGGCc -3'
miRNA:   3'- -CCGUUccUGUGCG---GCCugCCGGgCUG- -5'
26515 5' -60.8 NC_005357.1 + 4628 0.66 0.387864
Target:  5'- cGGCGGGGAugcugggcCACGCUGcGuCGGCCaucGCg -3'
miRNA:   3'- -CCGUUCCU--------GUGCGGC-CuGCCGGgc-UG- -5'
26515 5' -60.8 NC_005357.1 + 9312 0.66 0.387864
Target:  5'- cGGCGAccuggcGGcGCACGUCGGcGCGGCgggCGGCg -3'
miRNA:   3'- -CCGUU------CC-UGUGCGGCC-UGCCGg--GCUG- -5'
26515 5' -60.8 NC_005357.1 + 1340 0.66 0.387864
Target:  5'- cGCGAGGAa--GCCGuggucGGCGGCCUuGCg -3'
miRNA:   3'- cCGUUCCUgugCGGC-----CUGCCGGGcUG- -5'
26515 5' -60.8 NC_005357.1 + 8641 0.66 0.387864
Target:  5'- uGGCGAGGu--CGCCGGccuucaucgcGCGG-UCGGCa -3'
miRNA:   3'- -CCGUUCCuguGCGGCC----------UGCCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17143 0.66 0.382624
Target:  5'- uGGCGAGGccgcuuugguacuuCACGUCGucGAUGcGCCCGAa -3'
miRNA:   3'- -CCGUUCCu-------------GUGCGGC--CUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 34257 0.66 0.379158
Target:  5'- cGGCAgcauccGGGcgcACGCGCagGGACGcaGCgCCGACa -3'
miRNA:   3'- -CCGU------UCC---UGUGCGg-CCUGC--CG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 14727 0.66 0.379158
Target:  5'- cGGCGAGc-CGCuGCCGGcgcGCGGCCUGu- -3'
miRNA:   3'- -CCGUUCcuGUG-CGGCC---UGCCGGGCug -5'
26515 5' -60.8 NC_005357.1 + 13565 0.66 0.378294
Target:  5'- aGCGAGGACguggcgcgGCGCUGGGacagcuuCGGCaaguCCGGCc -3'
miRNA:   3'- cCGUUCCUG--------UGCGGCCU-------GCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 38661 0.66 0.370583
Target:  5'- cGGCAcgaccgAGGcUACGUCcagcGGCGGCaCCGACg -3'
miRNA:   3'- -CCGU------UCCuGUGCGGc---CUGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 29750 0.66 0.362142
Target:  5'- aGGCGGGccucGACACGCgccugcgcaugaUGGGCGacgaCCCGACg -3'
miRNA:   3'- -CCGUUC----CUGUGCG------------GCCUGCc---GGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 14567 0.66 0.362142
Target:  5'- uGGCGAgcgcGGACACGUucuugagcagCGGcGCGG-CCGGCg -3'
miRNA:   3'- -CCGUU----CCUGUGCG----------GCC-UGCCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17344 0.66 0.361306
Target:  5'- cGGCGccGGGCGCGCUgcgcugGGugGcgaugcuGCCCGAUg -3'
miRNA:   3'- -CCGUu-CCUGUGCGG------CCugC-------CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 36453 0.66 0.357142
Target:  5'- aGGCAgAGGuguugcuguuugcuuACGCGCUGGACaauGGCCCc-- -3'
miRNA:   3'- -CCGU-UCC---------------UGUGCGGCCUG---CCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 34734 0.66 0.353836
Target:  5'- cGGCAAGccGGC-CGCCGaGGucaaGCCCGACg -3'
miRNA:   3'- -CCGUUC--CUGuGCGGC-CUgc--CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 4352 0.66 0.353836
Target:  5'- aGCAgAGGAaucgGCCGGACGGCa-GGCg -3'
miRNA:   3'- cCGU-UCCUgug-CGGCCUGCCGggCUG- -5'
26515 5' -60.8 NC_005357.1 + 9870 0.66 0.353836
Target:  5'- uGGCAccGGCGCGCUGcuucuCGGCCaGGCg -3'
miRNA:   3'- -CCGUucCUGUGCGGCcu---GCCGGgCUG- -5'
26515 5' -60.8 NC_005357.1 + 41791 0.67 0.345665
Target:  5'- gGGCAccGACucgACGCCGGACGccguguCCaCGGCg -3'
miRNA:   3'- -CCGUucCUG---UGCGGCCUGCc-----GG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.