miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 41710 0.69 0.248089
Target:  5'- cGGCAAagccgccccuauccuGGGCG-GUaucuUGGGCGGCCCGGCc -3'
miRNA:   3'- -CCGUU---------------CCUGUgCG----GCCUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 2693 0.69 0.246217
Target:  5'- cGGCAGguugucguaguucguGGugaACACGuuGGccggacgcuugagcGCGGCCCGGCg -3'
miRNA:   3'- -CCGUU---------------CC---UGUGCggCC--------------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41053 0.69 0.243739
Target:  5'- cGCGAGGACuugcgcuucgguCGCCGGAUGcGCaaggccgCCGACc -3'
miRNA:   3'- cCGUUCCUGu-----------GCGGCCUGC-CG-------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 14626 0.69 0.258273
Target:  5'- cGCGAGGACGUGCUGcGGCuGCgCGGCg -3'
miRNA:   3'- cCGUUCCUGUGCGGC-CUGcCGgGCUG- -5'
26515 5' -60.8 NC_005357.1 + 16006 0.69 0.232252
Target:  5'- cGCAGGGACAgguCGCCGGugacgaaaccguUGGCCUGcCa -3'
miRNA:   3'- cCGUUCCUGU---GCGGCCu-----------GCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 10751 0.69 0.233439
Target:  5'- cGcCAAGGGCGCGCUcGAcuuCGGCCCG-Ca -3'
miRNA:   3'- cC-GUUCCUGUGCGGcCU---GCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 18566 0.69 0.258273
Target:  5'- cGGUgGAGGcCGCGCuCGcgguGACGGCCUGGCc -3'
miRNA:   3'- -CCG-UUCCuGUGCG-GC----CUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 42245 0.69 0.258273
Target:  5'- uGGCGGGGAUgACGCCGGcauucugcgcGCGGCagcuugGGCa -3'
miRNA:   3'- -CCGUUCCUG-UGCGGCC----------UGCCGgg----CUG- -5'
26515 5' -60.8 NC_005357.1 + 36653 0.69 0.258273
Target:  5'- uGGC-GGGACACGauGGucaaGGCCCuGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCggCCug--CCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 37572 0.69 0.256338
Target:  5'- cGGCGAGGAUugGaagcuggccgcuuuCCGugaauucgacGACGGCgCCGGCc -3'
miRNA:   3'- -CCGUUCCUGugC--------------GGC----------CUGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 9213 0.69 0.251869
Target:  5'- cGGCGcGGcGCACGUucUGcGGCGcGCCCGGCg -3'
miRNA:   3'- -CCGUuCC-UGUGCG--GC-CUGC-CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 21456 0.69 0.245596
Target:  5'- cGGCGGGGGCG-GCaGGAUguuGGCCuCGACc -3'
miRNA:   3'- -CCGUUCCUGUgCGgCCUG---CCGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 41457 0.69 0.233439
Target:  5'- cGGUgAAGGGCugGCUcGACacguGGCUCGACa -3'
miRNA:   3'- -CCG-UUCCUGugCGGcCUG----CCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 25747 0.69 0.233439
Target:  5'- cGGCAGcacgcuGGGCGCGCUgcuGGGCGGCggcaaCGAUg -3'
miRNA:   3'- -CCGUU------CCUGUGCGG---CCUGCCGg----GCUG- -5'
26515 5' -60.8 NC_005357.1 + 12840 0.69 0.239453
Target:  5'- uGGCAAaccGCGCGCCuGGGCGcGgCCGACc -3'
miRNA:   3'- -CCGUUcc-UGUGCGG-CCUGC-CgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 33576 0.7 0.221793
Target:  5'- uGGCGaccgAGGccaACGCGCUGGcccgcguugcgGCuGGCCCGACc -3'
miRNA:   3'- -CCGU----UCC---UGUGCGGCC-----------UG-CCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 20636 0.7 0.2156
Target:  5'- cGGUGuccgccaagaaccAGGACAucagcaccgUGCCGGGCGGCCUGuCc -3'
miRNA:   3'- -CCGU-------------UCCUGU---------GCGGCCUGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 4049 0.7 0.210645
Target:  5'- cGGCGAGcGGCAgGCCa-GCGGCCCa-- -3'
miRNA:   3'- -CCGUUC-CUGUgCGGccUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 16116 0.7 0.205254
Target:  5'- cGGCu---GCACGUCGGugGcCCCGACg -3'
miRNA:   3'- -CCGuuccUGUGCGGCCugCcGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34425 0.7 0.2101
Target:  5'- uGGCGccaAGGGCACGUCcGACGccguggugcugcuGCCUGACg -3'
miRNA:   3'- -CCGU---UCCUGUGCGGcCUGC-------------CGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.