Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26515 | 5' | -60.8 | NC_005357.1 | + | 17840 | 1.1 | 0.000191 |
Target: 5'- cGGCAAGGACACGCCGGACGGCCCGACc -3' miRNA: 3'- -CCGUUCCUGUGCGGCCUGCCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 15691 | 0.79 | 0.042564 |
Target: 5'- cGCAGcGGGCGCGCUGGcggUGGCCCGGCu -3' miRNA: 3'- cCGUU-CCUGUGCGGCCu--GCCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 23369 | 0.78 | 0.058207 |
Target: 5'- cGGCGAGGACACGCUGaucGACGcCgCCGGCg -3' miRNA: 3'- -CCGUUCCUGUGCGGC---CUGCcG-GGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6381 | 0.77 | 0.059879 |
Target: 5'- cGGCAaucAGGcGCAgGCCGGcCGGCCCGGu -3' miRNA: 3'- -CCGU---UCC-UGUgCGGCCuGCCGGGCUg -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 16577 | 0.75 | 0.096458 |
Target: 5'- aGCGc-GACGCGCCGGACGaGgCCGACc -3' miRNA: 3'- cCGUucCUGUGCGGCCUGC-CgGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 16890 | 0.73 | 0.120253 |
Target: 5'- cGGCuacgGGGGCGCuGCCGGcgGCGGCaaaaCCGACc -3' miRNA: 3'- -CCGu---UCCUGUG-CGGCC--UGCCG----GGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 30591 | 0.73 | 0.123586 |
Target: 5'- gGGCuGGGAUACGUCGG-UGGCaUCGGCg -3' miRNA: 3'- -CCGuUCCUGUGCGGCCuGCCG-GGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 17692 | 0.73 | 0.127005 |
Target: 5'- gGGuCGAGGcCGCGCaGGcgcgguggaaGCGGCCCGACc -3' miRNA: 3'- -CC-GUUCCuGUGCGgCC----------UGCCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 27492 | 0.73 | 0.127005 |
Target: 5'- cGCGAGGA--UGCCGG-CGGCCuCGGCc -3' miRNA: 3'- cCGUUCCUguGCGGCCuGCCGG-GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 22798 | 0.73 | 0.130511 |
Target: 5'- gGGCcGGucaGCAuggUGCCGGACuGGCCCGACu -3' miRNA: 3'- -CCGuUCc--UGU---GCGGCCUG-CCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 28381 | 0.73 | 0.137792 |
Target: 5'- uGGCGAGGuguuccaguuCgACGCCGG-CGGCgCGGCg -3' miRNA: 3'- -CCGUUCCu---------G-UGCGGCCuGCCGgGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 24337 | 0.73 | 0.137792 |
Target: 5'- aGGCGuccuGGuuCGCGCCGGcuucgGCGGCCCaGCa -3' miRNA: 3'- -CCGUu---CCu-GUGCGGCC-----UGCCGGGcUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 35340 | 0.72 | 0.145444 |
Target: 5'- cGCGuGGGCGCGCCGuGGguaGGCCgCGGCg -3' miRNA: 3'- cCGUuCCUGUGCGGC-CUg--CCGG-GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 4672 | 0.71 | 0.170778 |
Target: 5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3' miRNA: 3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 18374 | 0.71 | 0.180063 |
Target: 5'- cGGCGAGGuugGCcuugccgaugGCGCCGGugGCGGCCacguCGGCg -3' miRNA: 3'- -CCGUUCC---UG----------UGCGGCC--UGCCGG----GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 26256 | 0.71 | 0.184872 |
Target: 5'- aGGCAcGGGCAccCGCCGGccugguCGGCUCGcGCa -3' miRNA: 3'- -CCGUuCCUGU--GCGGCCu-----GCCGGGC-UG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 14855 | 0.71 | 0.189793 |
Target: 5'- cGGCcAGcGccGCACGCUGGGCGccuuuaaguuGCCCGGCu -3' miRNA: 3'- -CCGuUC-C--UGUGCGGCCUGC----------CGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 40703 | 0.7 | 0.19483 |
Target: 5'- cGCGAGGACuuggacgcccuCGCCGGcacgcCGGCCCacGGCg -3' miRNA: 3'- cCGUUCCUGu----------GCGGCCu----GCCGGG--CUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 24570 | 0.7 | 0.19483 |
Target: 5'- uGGCGAGGccggcCACgGUCGGGCcGUCCGGCg -3' miRNA: 3'- -CCGUUCCu----GUG-CGGCCUGcCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6237 | 0.7 | 0.199983 |
Target: 5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3' miRNA: 3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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