miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 25485 0.67 0.33763
Target:  5'- cGGC--GGcACGCuGCUGGACGGCgCCGuGCc -3'
miRNA:   3'- -CCGuuCC-UGUG-CGGCCUGCCG-GGC-UG- -5'
26515 5' -60.8 NC_005357.1 + 42115 0.67 0.33763
Target:  5'- cGGUAcGG-CACGCCcuGGACGGaagagcgcgccuUCCGGCg -3'
miRNA:   3'- -CCGUuCCuGUGCGG--CCUGCC------------GGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17099 0.67 0.335246
Target:  5'- cGGCcuGGACaaucccggcgacgaGCGCCGGuggcaGGgCCGGCc -3'
miRNA:   3'- -CCGuuCCUG--------------UGCGGCCug---CCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 5520 0.67 0.329732
Target:  5'- cGU-AGGACACGCCGG-CcGCCCa-- -3'
miRNA:   3'- cCGuUCCUGUGCGGCCuGcCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 6472 0.67 0.314348
Target:  5'- cGCAGGaacuGCACGCCGcGCaGGCCCG-Ca -3'
miRNA:   3'- cCGUUCc---UGUGCGGCcUG-CCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 30403 0.67 0.314348
Target:  5'- gGGCAA-GACcuCGCCGGccACGGCCgcgcugcuggcCGACg -3'
miRNA:   3'- -CCGUUcCUGu-GCGGCC--UGCCGG-----------GCUG- -5'
26515 5' -60.8 NC_005357.1 + 27700 0.67 0.314348
Target:  5'- aGGCc---GCGCGCCGGcaGCGGCUCGcCg -3'
miRNA:   3'- -CCGuuccUGUGCGGCC--UGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 9860 0.67 0.306861
Target:  5'- cGGCGGuguccuGAUACGUCGGAgCGGCaucgCCGGCg -3'
miRNA:   3'- -CCGUUc-----CUGUGCGGCCU-GCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 32474 0.68 0.299512
Target:  5'- aGGUggGGGCG-GCC-GAUGcGCCCGAa -3'
miRNA:   3'- -CCGuuCCUGUgCGGcCUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 24287 0.68 0.299512
Target:  5'- cGGCAAGcuGCGCgaGCCGGGCGacaaGUUCGACg -3'
miRNA:   3'- -CCGUUCc-UGUG--CGGCCUGC----CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 32088 0.68 0.299512
Target:  5'- --gAAGGcACACGCCGcagcgacggcuACGGCCUGGCg -3'
miRNA:   3'- ccgUUCC-UGUGCGGCc----------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 25571 0.68 0.2923
Target:  5'- cGGCGucGGAguugUACGCCGcGgucuGCGGCCCaGGCa -3'
miRNA:   3'- -CCGUu-CCU----GUGCGGC-C----UGCCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 28269 0.68 0.2923
Target:  5'- -uCAAGGguaucaACGCGCUGGaACGGCCgGAa -3'
miRNA:   3'- ccGUUCC------UGUGCGGCC-UGCCGGgCUg -5'
26515 5' -60.8 NC_005357.1 + 32006 0.68 0.285224
Target:  5'- uGCGAaacccucGACACGCUGGACGcCCaCGACa -3'
miRNA:   3'- cCGUUc------CUGUGCGGCCUGCcGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 18847 0.68 0.278285
Target:  5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3'
miRNA:   3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 34367 0.68 0.278285
Target:  5'- aGGCAGcgaccuGGGCGCGCgucaUGGACGGCggcaaggaCGGCg -3'
miRNA:   3'- -CCGUU------CCUGUGCG----GCCUGCCGg-------GCUG- -5'
26515 5' -60.8 NC_005357.1 + 18675 0.68 0.26481
Target:  5'- cGGCccGGugGCGCCGGcAUGGCgCUGcuGCg -3'
miRNA:   3'- -CCGuuCCugUGCGGCC-UGCCG-GGC--UG- -5'
26515 5' -60.8 NC_005357.1 + 15069 0.68 0.26481
Target:  5'- uGGCu-GGACGagUGCUGcGAgguCGGCCCGGCc -3'
miRNA:   3'- -CCGuuCCUGU--GCGGC-CU---GCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 42245 0.69 0.258273
Target:  5'- uGGCGGGGAUgACGCCGGcauucugcgcGCGGCagcuugGGCa -3'
miRNA:   3'- -CCGUUCCUG-UGCGGCC----------UGCCGgg----CUG- -5'
26515 5' -60.8 NC_005357.1 + 14626 0.69 0.258273
Target:  5'- cGCGAGGACGUGCUGcGGCuGCgCGGCg -3'
miRNA:   3'- cCGUUCCUGUGCGGC-CUGcCGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.