Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26515 | 5' | -60.8 | NC_005357.1 | + | 1340 | 0.66 | 0.387864 |
Target: 5'- cGCGAGGAa--GCCGuggucGGCGGCCUuGCg -3' miRNA: 3'- cCGUUCCUgugCGGC-----CUGCCGGGcUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 2693 | 0.69 | 0.246217 |
Target: 5'- cGGCAGguugucguaguucguGGugaACACGuuGGccggacgcuugagcGCGGCCCGGCg -3' miRNA: 3'- -CCGUU---------------CC---UGUGCggCC--------------UGCCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 4049 | 0.7 | 0.210645 |
Target: 5'- cGGCGAGcGGCAgGCCa-GCGGCCCa-- -3' miRNA: 3'- -CCGUUC-CUGUgCGGccUGCCGGGcug -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 4352 | 0.66 | 0.353836 |
Target: 5'- aGCAgAGGAaucgGCCGGACGGCa-GGCg -3' miRNA: 3'- cCGU-UCCUgug-CGGCCUGCCGggCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 4628 | 0.66 | 0.387864 |
Target: 5'- cGGCGGGGAugcugggcCACGCUGcGuCGGCCaucGCg -3' miRNA: 3'- -CCGUUCCU--------GUGCGGC-CuGCCGGgc-UG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 4672 | 0.71 | 0.170778 |
Target: 5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3' miRNA: 3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 5520 | 0.67 | 0.329732 |
Target: 5'- cGU-AGGACACGCCGG-CcGCCCa-- -3' miRNA: 3'- cCGuUCCUGUGCGGCCuGcCGGGcug -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6074 | 0.66 | 0.396701 |
Target: 5'- uGCAGGGAUACgGCCccGCGaCCCGAUc -3' miRNA: 3'- cCGUUCCUGUG-CGGccUGCcGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6237 | 0.7 | 0.199983 |
Target: 5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3' miRNA: 3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6381 | 0.77 | 0.059879 |
Target: 5'- cGGCAaucAGGcGCAgGCCGGcCGGCCCGGu -3' miRNA: 3'- -CCGU---UCC-UGUgCGGCCuGCCGGGCUg -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 6472 | 0.67 | 0.314348 |
Target: 5'- cGCAGGaacuGCACGCCGcGCaGGCCCG-Ca -3' miRNA: 3'- cCGUUCc---UGUGCGGCcUG-CCGGGCuG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 8641 | 0.66 | 0.387864 |
Target: 5'- uGGCGAGGu--CGCCGGccuucaucgcGCGG-UCGGCa -3' miRNA: 3'- -CCGUUCCuguGCGGCC----------UGCCgGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 9213 | 0.69 | 0.251869 |
Target: 5'- cGGCGcGGcGCACGUucUGcGGCGcGCCCGGCg -3' miRNA: 3'- -CCGUuCC-UGUGCG--GC-CUGC-CGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 9312 | 0.66 | 0.387864 |
Target: 5'- cGGCGAccuggcGGcGCACGUCGGcGCGGCgggCGGCg -3' miRNA: 3'- -CCGUU------CC-UGUGCGGCC-UGCCGg--GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 9860 | 0.67 | 0.306861 |
Target: 5'- cGGCGGuguccuGAUACGUCGGAgCGGCaucgCCGGCg -3' miRNA: 3'- -CCGUUc-----CUGUGCGGCCU-GCCG----GGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 9870 | 0.66 | 0.353836 |
Target: 5'- uGGCAccGGCGCGCUGcuucuCGGCCaGGCg -3' miRNA: 3'- -CCGUucCUGUGCGGCcu---GCCGGgCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 10751 | 0.69 | 0.233439 |
Target: 5'- cGcCAAGGGCGCGCUcGAcuuCGGCCCG-Ca -3' miRNA: 3'- cC-GUUCCUGUGCGGcCU---GCCGGGCuG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 10920 | 0.69 | 0.251236 |
Target: 5'- aGCGAGGcccagcaGCACGCCGG-CGGCaaGGu -3' miRNA: 3'- cCGUUCC-------UGUGCGGCCuGCCGggCUg -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 12409 | 0.7 | 0.20366 |
Target: 5'- gGGCAccaAGGGCGCgGCCGugcaguuggagcacGAUGGCCCGu- -3' miRNA: 3'- -CCGU---UCCUGUG-CGGC--------------CUGCCGGGCug -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 12840 | 0.69 | 0.239453 |
Target: 5'- uGGCAAaccGCGCGCCuGGGCGcGgCCGACc -3' miRNA: 3'- -CCGUUcc-UGUGCGG-CCUGC-CgGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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