Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26515 | 5' | -60.8 | NC_005357.1 | + | 18847 | 0.68 | 0.278285 |
Target: 5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3' miRNA: 3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 20636 | 0.7 | 0.2156 |
Target: 5'- cGGUGuccgccaagaaccAGGACAucagcaccgUGCCGGGCGGCCUGuCc -3' miRNA: 3'- -CCGU-------------UCCUGU---------GCGGCCUGCCGGGCuG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 21456 | 0.69 | 0.245596 |
Target: 5'- cGGCGGGGGCG-GCaGGAUguuGGCCuCGACc -3' miRNA: 3'- -CCGUUCCUGUgCGgCCUG---CCGG-GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 22798 | 0.73 | 0.130511 |
Target: 5'- gGGCcGGucaGCAuggUGCCGGACuGGCCCGACu -3' miRNA: 3'- -CCGuUCc--UGU---GCGGCCUG-CCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 23369 | 0.78 | 0.058207 |
Target: 5'- cGGCGAGGACACGCUGaucGACGcCgCCGGCg -3' miRNA: 3'- -CCGUUCCUGUGCGGC---CUGCcG-GGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 24287 | 0.68 | 0.299512 |
Target: 5'- cGGCAAGcuGCGCgaGCCGGGCGacaaGUUCGACg -3' miRNA: 3'- -CCGUUCc-UGUG--CGGCCUGC----CGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 24337 | 0.73 | 0.137792 |
Target: 5'- aGGCGuccuGGuuCGCGCCGGcuucgGCGGCCCaGCa -3' miRNA: 3'- -CCGUu---CCu-GUGCGGCC-----UGCCGGGcUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 24570 | 0.7 | 0.19483 |
Target: 5'- uGGCGAGGccggcCACgGUCGGGCcGUCCGGCg -3' miRNA: 3'- -CCGUUCCu----GUG-CGGCCUGcCGGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 25485 | 0.67 | 0.33763 |
Target: 5'- cGGC--GGcACGCuGCUGGACGGCgCCGuGCc -3' miRNA: 3'- -CCGuuCC-UGUG-CGGCCUGCCG-GGC-UG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 25571 | 0.68 | 0.2923 |
Target: 5'- cGGCGucGGAguugUACGCCGcGgucuGCGGCCCaGGCa -3' miRNA: 3'- -CCGUu-CCU----GUGCGGC-C----UGCCGGG-CUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 25747 | 0.69 | 0.233439 |
Target: 5'- cGGCAGcacgcuGGGCGCGCUgcuGGGCGGCggcaaCGAUg -3' miRNA: 3'- -CCGUU------CCUGUGCGG---CCUGCCGg----GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 26256 | 0.71 | 0.184872 |
Target: 5'- aGGCAcGGGCAccCGCCGGccugguCGGCUCGcGCa -3' miRNA: 3'- -CCGUuCCUGU--GCGGCCu-----GCCGGGC-UG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 27492 | 0.73 | 0.127005 |
Target: 5'- cGCGAGGA--UGCCGG-CGGCCuCGGCc -3' miRNA: 3'- cCGUUCCUguGCGGCCuGCCGG-GCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 27700 | 0.67 | 0.314348 |
Target: 5'- aGGCc---GCGCGCCGGcaGCGGCUCGcCg -3' miRNA: 3'- -CCGuuccUGUGCGGCC--UGCCGGGCuG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 27964 | 0.66 | 0.387864 |
Target: 5'- uGGCGA--GCACGUccuCGGugGGCUgGGCc -3' miRNA: 3'- -CCGUUccUGUGCG---GCCugCCGGgCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 28269 | 0.68 | 0.2923 |
Target: 5'- -uCAAGGguaucaACGCGCUGGaACGGCCgGAa -3' miRNA: 3'- ccGUUCC------UGUGCGGCC-UGCCGGgCUg -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 28381 | 0.73 | 0.137792 |
Target: 5'- uGGCGAGGuguuccaguuCgACGCCGG-CGGCgCGGCg -3' miRNA: 3'- -CCGUUCCu---------G-UGCGGCCuGCCGgGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 29250 | 0.66 | 0.396701 |
Target: 5'- cGGcCAAGGGCGC-CCaGcGCGG-CCGACa -3' miRNA: 3'- -CC-GUUCCUGUGcGGcC-UGCCgGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 29750 | 0.66 | 0.362142 |
Target: 5'- aGGCGGGccucGACACGCgccugcgcaugaUGGGCGacgaCCCGACg -3' miRNA: 3'- -CCGUUC----CUGUGCG------------GCCUGCc---GGGCUG- -5' |
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26515 | 5' | -60.8 | NC_005357.1 | + | 30403 | 0.67 | 0.314348 |
Target: 5'- gGGCAA-GACcuCGCCGGccACGGCCgcgcugcuggcCGACg -3' miRNA: 3'- -CCGUUcCUGu-GCGGCC--UGCCGG-----------GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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