miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 30591 0.73 0.123586
Target:  5'- gGGCuGGGAUACGUCGG-UGGCaUCGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCGGCCuGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 32006 0.68 0.285224
Target:  5'- uGCGAaacccucGACACGCUGGACGcCCaCGACa -3'
miRNA:   3'- cCGUUc------CUGUGCGGCCUGCcGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 32088 0.68 0.299512
Target:  5'- --gAAGGcACACGCCGcagcgacggcuACGGCCUGGCg -3'
miRNA:   3'- ccgUUCC-UGUGCGGCc----------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 32474 0.68 0.299512
Target:  5'- aGGUggGGGCG-GCC-GAUGcGCCCGAa -3'
miRNA:   3'- -CCGuuCCUGUgCGGcCUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 33576 0.7 0.221793
Target:  5'- uGGCGaccgAGGccaACGCGCUGGcccgcguugcgGCuGGCCCGACc -3'
miRNA:   3'- -CCGU----UCC---UGUGCGGCC-----------UG-CCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34257 0.66 0.379158
Target:  5'- cGGCAgcauccGGGcgcACGCGCagGGACGcaGCgCCGACa -3'
miRNA:   3'- -CCGU------UCC---UGUGCGg-CCUGC--CG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34367 0.68 0.278285
Target:  5'- aGGCAGcgaccuGGGCGCGCgucaUGGACGGCggcaaggaCGGCg -3'
miRNA:   3'- -CCGUU------CCUGUGCG----GCCUGCCGg-------GCUG- -5'
26515 5' -60.8 NC_005357.1 + 34425 0.7 0.2101
Target:  5'- uGGCGccaAGGGCACGUCcGACGccguggugcugcuGCCUGACg -3'
miRNA:   3'- -CCGU---UCCUGUGCGGcCUGC-------------CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34614 0.7 0.199983
Target:  5'- gGGCAacgAGGGCAacauccagcgccUGCUGGGCGGCgaaggguggacgCCGGCg -3'
miRNA:   3'- -CCGU---UCCUGU------------GCGGCCUGCCG------------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34734 0.66 0.353836
Target:  5'- cGGCAAGccGGC-CGCCGaGGucaaGCCCGACg -3'
miRNA:   3'- -CCGUUC--CUGuGCGGC-CUgc--CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 35340 0.72 0.145444
Target:  5'- cGCGuGGGCGCGCCGuGGguaGGCCgCGGCg -3'
miRNA:   3'- cCGUuCCUGUGCGGC-CUg--CCGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 36453 0.66 0.357142
Target:  5'- aGGCAgAGGuguugcuguuugcuuACGCGCUGGACaauGGCCCc-- -3'
miRNA:   3'- -CCGU-UCC---------------UGUGCGGCCUG---CCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 36653 0.69 0.258273
Target:  5'- uGGC-GGGACACGauGGucaaGGCCCuGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCggCCug--CCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 37572 0.69 0.256338
Target:  5'- cGGCGAGGAUugGaagcuggccgcuuuCCGugaauucgacGACGGCgCCGGCc -3'
miRNA:   3'- -CCGUUCCUGugC--------------GGC----------CUGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 38661 0.66 0.370583
Target:  5'- cGGCAcgaccgAGGcUACGUCcagcGGCGGCaCCGACg -3'
miRNA:   3'- -CCGU------UCCuGUGCGGc---CUGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 40703 0.7 0.19483
Target:  5'- cGCGAGGACuuggacgcccuCGCCGGcacgcCGGCCCacGGCg -3'
miRNA:   3'- cCGUUCCUGu----------GCGGCCu----GCCGGG--CUG- -5'
26515 5' -60.8 NC_005357.1 + 41053 0.69 0.243739
Target:  5'- cGCGAGGACuugcgcuucgguCGCCGGAUGcGCaaggccgCCGACc -3'
miRNA:   3'- cCGUUCCUGu-----------GCGGCCUGC-CG-------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41457 0.69 0.233439
Target:  5'- cGGUgAAGGGCugGCUcGACacguGGCUCGACa -3'
miRNA:   3'- -CCG-UUCCUGugCGGcCUG----CCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41620 0.69 0.258273
Target:  5'- cGGCAAGGGCugGgCGcGGCGcgucGCCgGAa -3'
miRNA:   3'- -CCGUUCCUGugCgGC-CUGC----CGGgCUg -5'
26515 5' -60.8 NC_005357.1 + 41710 0.69 0.248089
Target:  5'- cGGCAAagccgccccuauccuGGGCG-GUaucuUGGGCGGCCCGGCc -3'
miRNA:   3'- -CCGUU---------------CCUGUgCG----GCCUGCCGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.