miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 21456 0.69 0.245596
Target:  5'- cGGCGGGGGCG-GCaGGAUguuGGCCuCGACc -3'
miRNA:   3'- -CCGUUCCUGUgCGgCCUG---CCGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 20636 0.7 0.2156
Target:  5'- cGGUGuccgccaagaaccAGGACAucagcaccgUGCCGGGCGGCCUGuCc -3'
miRNA:   3'- -CCGU-------------UCCUGU---------GCGGCCUGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 18847 0.68 0.278285
Target:  5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3'
miRNA:   3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 18675 0.68 0.26481
Target:  5'- cGGCccGGugGCGCCGGcAUGGCgCUGcuGCg -3'
miRNA:   3'- -CCGuuCCugUGCGGCC-UGCCG-GGC--UG- -5'
26515 5' -60.8 NC_005357.1 + 18566 0.69 0.258273
Target:  5'- cGGUgGAGGcCGCGCuCGcgguGACGGCCUGGCc -3'
miRNA:   3'- -CCG-UUCCuGUGCG-GC----CUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 18475 0.7 0.221793
Target:  5'- cGGCAAaugccGACcuCGCCGGGCGugcGCCUGACc -3'
miRNA:   3'- -CCGUUc----CUGu-GCGGCCUGC---CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 18374 0.71 0.180063
Target:  5'- cGGCGAGGuugGCcuugccgaugGCGCCGGugGCGGCCacguCGGCg -3'
miRNA:   3'- -CCGUUCC---UG----------UGCGGCC--UGCCGG----GCUG- -5'
26515 5' -60.8 NC_005357.1 + 17840 1.1 0.000191
Target:  5'- cGGCAAGGACACGCCGGACGGCCCGACc -3'
miRNA:   3'- -CCGUUCCUGUGCGGCCUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17692 0.73 0.127005
Target:  5'- gGGuCGAGGcCGCGCaGGcgcgguggaaGCGGCCCGACc -3'
miRNA:   3'- -CC-GUUCCuGUGCGgCC----------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17344 0.66 0.361306
Target:  5'- cGGCGccGGGCGCGCUgcgcugGGugGcgaugcuGCCCGAUg -3'
miRNA:   3'- -CCGUu-CCUGUGCGG------CCugC-------CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17143 0.66 0.382624
Target:  5'- uGGCGAGGccgcuuugguacuuCACGUCGucGAUGcGCCCGAa -3'
miRNA:   3'- -CCGUUCCu-------------GUGCGGC--CUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 17099 0.67 0.335246
Target:  5'- cGGCcuGGACaaucccggcgacgaGCGCCGGuggcaGGgCCGGCc -3'
miRNA:   3'- -CCGuuCCUG--------------UGCGGCCug---CCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 16890 0.73 0.120253
Target:  5'- cGGCuacgGGGGCGCuGCCGGcgGCGGCaaaaCCGACc -3'
miRNA:   3'- -CCGu---UCCUGUG-CGGCC--UGCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 16577 0.75 0.096458
Target:  5'- aGCGc-GACGCGCCGGACGaGgCCGACc -3'
miRNA:   3'- cCGUucCUGUGCGGCCUGC-CgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 16116 0.7 0.205254
Target:  5'- cGGCu---GCACGUCGGugGcCCCGACg -3'
miRNA:   3'- -CCGuuccUGUGCGGCCugCcGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 16006 0.69 0.232252
Target:  5'- cGCAGGGACAgguCGCCGGugacgaaaccguUGGCCUGcCa -3'
miRNA:   3'- cCGUUCCUGU---GCGGCCu-----------GCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 15691 0.79 0.042564
Target:  5'- cGCAGcGGGCGCGCUGGcggUGGCCCGGCu -3'
miRNA:   3'- cCGUU-CCUGUGCGGCCu--GCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 15069 0.68 0.26481
Target:  5'- uGGCu-GGACGagUGCUGcGAgguCGGCCCGGCc -3'
miRNA:   3'- -CCGuuCCUGU--GCGGC-CU---GCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 14855 0.71 0.189793
Target:  5'- cGGCcAGcGccGCACGCUGGGCGccuuuaaguuGCCCGGCu -3'
miRNA:   3'- -CCGuUC-C--UGUGCGGCCUGC----------CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 14727 0.66 0.379158
Target:  5'- cGGCGAGc-CGCuGCCGGcgcGCGGCCUGu- -3'
miRNA:   3'- -CCGUUCcuGUG-CGGCC---UGCCGGGCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.