miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 17840 1.1 0.000191
Target:  5'- cGGCAAGGACACGCCGGACGGCCCGACc -3'
miRNA:   3'- -CCGUUCCUGUGCGGCCUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41710 0.69 0.248089
Target:  5'- cGGCAAagccgccccuauccuGGGCG-GUaucuUGGGCGGCCCGGCc -3'
miRNA:   3'- -CCGUU---------------CCUGUgCG----GCCUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41620 0.69 0.258273
Target:  5'- cGGCAAGGGCugGgCGcGGCGcgucGCCgGAa -3'
miRNA:   3'- -CCGUUCCUGugCgGC-CUGC----CGGgCUg -5'
26515 5' -60.8 NC_005357.1 + 29250 0.66 0.396701
Target:  5'- cGGcCAAGGGCGC-CCaGcGCGG-CCGACa -3'
miRNA:   3'- -CC-GUUCCUGUGcGGcC-UGCCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17692 0.73 0.127005
Target:  5'- gGGuCGAGGcCGCGCaGGcgcgguggaaGCGGCCCGACc -3'
miRNA:   3'- -CC-GUUCCuGUGCGgCC----------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 24337 0.73 0.137792
Target:  5'- aGGCGuccuGGuuCGCGCCGGcuucgGCGGCCCaGCa -3'
miRNA:   3'- -CCGUu---CCu-GUGCGGCC-----UGCCGGGcUG- -5'
26515 5' -60.8 NC_005357.1 + 40703 0.7 0.19483
Target:  5'- cGCGAGGACuuggacgcccuCGCCGGcacgcCGGCCCacGGCg -3'
miRNA:   3'- cCGUUCCUGu----------GCGGCCu----GCCGGG--CUG- -5'
26515 5' -60.8 NC_005357.1 + 34614 0.7 0.199983
Target:  5'- gGGCAacgAGGGCAacauccagcgccUGCUGGGCGGCgaaggguggacgCCGGCg -3'
miRNA:   3'- -CCGU---UCCUGU------------GCGGCCUGCCG------------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 20636 0.7 0.2156
Target:  5'- cGGUGuccgccaagaaccAGGACAucagcaccgUGCCGGGCGGCCUGuCc -3'
miRNA:   3'- -CCGU-------------UCCUGU---------GCGGCCUGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 2693 0.69 0.246217
Target:  5'- cGGCAGguugucguaguucguGGugaACACGuuGGccggacgcuugagcGCGGCCCGGCg -3'
miRNA:   3'- -CCGUU---------------CC---UGUGCggCC--------------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 18475 0.7 0.221793
Target:  5'- cGGCAAaugccGACcuCGCCGGGCGugcGCCUGACc -3'
miRNA:   3'- -CCGUUc----CUGu-GCGGCCUGC---CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 4049 0.7 0.210645
Target:  5'- cGGCGAGcGGCAgGCCa-GCGGCCCa-- -3'
miRNA:   3'- -CCGUUC-CUGUgCGGccUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 15691 0.79 0.042564
Target:  5'- cGCAGcGGGCGCGCUGGcggUGGCCCGGCu -3'
miRNA:   3'- cCGUU-CCUGUGCGGCCu--GCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 12840 0.69 0.239453
Target:  5'- uGGCAAaccGCGCGCCuGGGCGcGgCCGACc -3'
miRNA:   3'- -CCGUUcc-UGUGCGG-CCUGC-CgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 23369 0.78 0.058207
Target:  5'- cGGCGAGGACACGCUGaucGACGcCgCCGGCg -3'
miRNA:   3'- -CCGUUCCUGUGCGGC---CUGCcG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 12409 0.7 0.20366
Target:  5'- gGGCAccaAGGGCGCgGCCGugcaguuggagcacGAUGGCCCGu- -3'
miRNA:   3'- -CCGU---UCCUGUG-CGGC--------------CUGCCGGGCug -5'
26515 5' -60.8 NC_005357.1 + 41053 0.69 0.243739
Target:  5'- cGCGAGGACuugcgcuucgguCGCCGGAUGcGCaaggccgCCGACc -3'
miRNA:   3'- cCGUUCCUGu-----------GCGGCCUGC-CG-------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 10920 0.69 0.251236
Target:  5'- aGCGAGGcccagcaGCACGCCGG-CGGCaaGGu -3'
miRNA:   3'- cCGUUCC-------UGUGCGGCCuGCCGggCUg -5'
26515 5' -60.8 NC_005357.1 + 16890 0.73 0.120253
Target:  5'- cGGCuacgGGGGCGCuGCCGGcgGCGGCaaaaCCGACc -3'
miRNA:   3'- -CCGu---UCCUGUG-CGGCC--UGCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 35340 0.72 0.145444
Target:  5'- cGCGuGGGCGCGCCGuGGguaGGCCgCGGCg -3'
miRNA:   3'- cCGUuCCUGUGCGGC-CUg--CCGG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.