miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 18675 0.68 0.26481
Target:  5'- cGGCccGGugGCGCCGGcAUGGCgCUGcuGCg -3'
miRNA:   3'- -CCGuuCCugUGCGGCC-UGCCG-GGC--UG- -5'
26515 5' -60.8 NC_005357.1 + 14626 0.69 0.258273
Target:  5'- cGCGAGGACGUGCUGcGGCuGCgCGGCg -3'
miRNA:   3'- cCGUUCCUGUGCGGC-CUGcCGgGCUG- -5'
26515 5' -60.8 NC_005357.1 + 20636 0.7 0.2156
Target:  5'- cGGUGuccgccaagaaccAGGACAucagcaccgUGCCGGGCGGCCUGuCc -3'
miRNA:   3'- -CCGU-------------UCCUGU---------GCGGCCUGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 17692 0.73 0.127005
Target:  5'- gGGuCGAGGcCGCGCaGGcgcgguggaaGCGGCCCGACc -3'
miRNA:   3'- -CC-GUUCCuGUGCGgCC----------UGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 17344 0.66 0.361306
Target:  5'- cGGCGccGGGCGCGCUgcgcugGGugGcgaugcuGCCCGAUg -3'
miRNA:   3'- -CCGUu-CCUGUGCGG------CCugC-------CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 9860 0.67 0.306861
Target:  5'- cGGCGGuguccuGAUACGUCGGAgCGGCaucgCCGGCg -3'
miRNA:   3'- -CCGUUc-----CUGUGCGGCCU-GCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 10920 0.69 0.251236
Target:  5'- aGCGAGGcccagcaGCACGCCGG-CGGCaaGGu -3'
miRNA:   3'- cCGUUCC-------UGUGCGGCCuGCCGggCUg -5'
26515 5' -60.8 NC_005357.1 + 16890 0.73 0.120253
Target:  5'- cGGCuacgGGGGCGCuGCCGGcgGCGGCaaaaCCGACc -3'
miRNA:   3'- -CCGu---UCCUGUG-CGGCC--UGCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 24287 0.68 0.299512
Target:  5'- cGGCAAGcuGCGCgaGCCGGGCGacaaGUUCGACg -3'
miRNA:   3'- -CCGUUCc-UGUG--CGGCCUGC----CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 23369 0.78 0.058207
Target:  5'- cGGCGAGGACACGCUGaucGACGcCgCCGGCg -3'
miRNA:   3'- -CCGUUCCUGUGCGGC---CUGCcG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 41620 0.69 0.258273
Target:  5'- cGGCAAGGGCugGgCGcGGCGcgucGCCgGAa -3'
miRNA:   3'- -CCGUUCCUGugCgGC-CUGC----CGGgCUg -5'
26515 5' -60.8 NC_005357.1 + 34367 0.68 0.278285
Target:  5'- aGGCAGcgaccuGGGCGCGCgucaUGGACGGCggcaaggaCGGCg -3'
miRNA:   3'- -CCGUU------CCUGUGCG----GCCUGCCGg-------GCUG- -5'
26515 5' -60.8 NC_005357.1 + 41053 0.69 0.243739
Target:  5'- cGCGAGGACuugcgcuucgguCGCCGGAUGcGCaaggccgCCGACc -3'
miRNA:   3'- cCGUUCCUGu-----------GCGGCCUGC-CG-------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 33576 0.7 0.221793
Target:  5'- uGGCGaccgAGGccaACGCGCUGGcccgcguugcgGCuGGCCCGACc -3'
miRNA:   3'- -CCGU----UCC---UGUGCGGCC-----------UG-CCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34614 0.7 0.199983
Target:  5'- gGGCAacgAGGGCAacauccagcgccUGCUGGGCGGCgaaggguggacgCCGGCg -3'
miRNA:   3'- -CCGU---UCCUGU------------GCGGCCUGCCG------------GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 24337 0.73 0.137792
Target:  5'- aGGCGuccuGGuuCGCGCCGGcuucgGCGGCCCaGCa -3'
miRNA:   3'- -CCGUu---CCu-GUGCGGCC-----UGCCGGGcUG- -5'
26515 5' -60.8 NC_005357.1 + 13565 0.66 0.378294
Target:  5'- aGCGAGGACguggcgcgGCGCUGGGacagcuuCGGCaaguCCGGCc -3'
miRNA:   3'- cCGUUCCUG--------UGCGGCCU-------GCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 29750 0.66 0.362142
Target:  5'- aGGCGGGccucGACACGCgccugcgcaugaUGGGCGacgaCCCGACg -3'
miRNA:   3'- -CCGUUC----CUGUGCG------------GCCUGCc---GGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 25485 0.67 0.33763
Target:  5'- cGGC--GGcACGCuGCUGGACGGCgCCGuGCc -3'
miRNA:   3'- -CCGuuCC-UGUG-CGGCCUGCCG-GGC-UG- -5'
26515 5' -60.8 NC_005357.1 + 30403 0.67 0.314348
Target:  5'- gGGCAA-GACcuCGCCGGccACGGCCgcgcugcuggcCGACg -3'
miRNA:   3'- -CCGUUcCUGu-GCGGCC--UGCCGG-----------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.