miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 13565 0.66 0.378294
Target:  5'- aGCGAGGACguggcgcgGCGCUGGGacagcuuCGGCaaguCCGGCc -3'
miRNA:   3'- cCGUUCCUG--------UGCGGCCU-------GCCG----GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 34367 0.68 0.278285
Target:  5'- aGGCAGcgaccuGGGCGCGCgucaUGGACGGCggcaaggaCGGCg -3'
miRNA:   3'- -CCGUU------CCUGUGCG----GCCUGCCGg-------GCUG- -5'
26515 5' -60.8 NC_005357.1 + 18675 0.68 0.26481
Target:  5'- cGGCccGGugGCGCCGGcAUGGCgCUGcuGCg -3'
miRNA:   3'- -CCGuuCCugUGCGGCC-UGCCG-GGC--UG- -5'
26515 5' -60.8 NC_005357.1 + 42115 0.67 0.33763
Target:  5'- cGGUAcGG-CACGCCcuGGACGGaagagcgcgccuUCCGGCg -3'
miRNA:   3'- -CCGUuCCuGUGCGG--CCUGCC------------GGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 4672 0.71 0.170778
Target:  5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3'
miRNA:   3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5'
26515 5' -60.8 NC_005357.1 + 28381 0.73 0.137792
Target:  5'- uGGCGAGGuguuccaguuCgACGCCGG-CGGCgCGGCg -3'
miRNA:   3'- -CCGUUCCu---------G-UGCGGCCuGCCGgGCUG- -5'
26515 5' -60.8 NC_005357.1 + 30591 0.73 0.123586
Target:  5'- gGGCuGGGAUACGUCGG-UGGCaUCGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCGGCCuGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 24570 0.7 0.19483
Target:  5'- uGGCGAGGccggcCACgGUCGGGCcGUCCGGCg -3'
miRNA:   3'- -CCGUUCCu----GUG-CGGCCUGcCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 6237 0.7 0.199983
Target:  5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3'
miRNA:   3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5'
26515 5' -60.8 NC_005357.1 + 16116 0.7 0.205254
Target:  5'- cGGCu---GCACGUCGGugGcCCCGACg -3'
miRNA:   3'- -CCGuuccUGUGCGGCCugCcGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 27700 0.67 0.314348
Target:  5'- aGGCc---GCGCGCCGGcaGCGGCUCGcCg -3'
miRNA:   3'- -CCGuuccUGUGCGGCC--UGCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 32474 0.68 0.299512
Target:  5'- aGGUggGGGCG-GCC-GAUGcGCCCGAa -3'
miRNA:   3'- -CCGuuCCUGUgCGGcCUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 25571 0.68 0.2923
Target:  5'- cGGCGucGGAguugUACGCCGcGgucuGCGGCCCaGGCa -3'
miRNA:   3'- -CCGUu-CCU----GUGCGGC-C----UGCCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 32006 0.68 0.285224
Target:  5'- uGCGAaacccucGACACGCUGGACGcCCaCGACa -3'
miRNA:   3'- cCGUUc------CUGUGCGGCCUGCcGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 18847 0.68 0.278285
Target:  5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3'
miRNA:   3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 18566 0.69 0.258273
Target:  5'- cGGUgGAGGcCGCGCuCGcgguGACGGCCUGGCc -3'
miRNA:   3'- -CCG-UUCCuGUGCG-GC----CUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 42245 0.69 0.258273
Target:  5'- uGGCGGGGAUgACGCCGGcauucugcgcGCGGCagcuugGGCa -3'
miRNA:   3'- -CCGUUCCUG-UGCGGCC----------UGCCGgg----CUG- -5'
26515 5' -60.8 NC_005357.1 + 36653 0.69 0.258273
Target:  5'- uGGC-GGGACACGauGGucaaGGCCCuGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCggCCug--CCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 16006 0.69 0.232252
Target:  5'- cGCAGGGACAgguCGCCGGugacgaaaccguUGGCCUGcCa -3'
miRNA:   3'- cCGUUCCUGU---GCGGCCu-----------GCCGGGCuG- -5'
26515 5' -60.8 NC_005357.1 + 34425 0.7 0.2101
Target:  5'- uGGCGccaAGGGCACGUCcGACGccguggugcugcuGCCUGACg -3'
miRNA:   3'- -CCGU---UCCUGUGCGGcCUGC-------------CGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.