miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26515 5' -60.8 NC_005357.1 + 9213 0.69 0.251869
Target:  5'- cGGCGcGGcGCACGUucUGcGGCGcGCCCGGCg -3'
miRNA:   3'- -CCGUuCC-UGUGCG--GC-CUGC-CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 37572 0.69 0.256338
Target:  5'- cGGCGAGGAUugGaagcuggccgcuuuCCGugaauucgacGACGGCgCCGGCc -3'
miRNA:   3'- -CCGUUCCUGugC--------------GGC----------CUGCCG-GGCUG- -5'
26515 5' -60.8 NC_005357.1 + 9870 0.66 0.353836
Target:  5'- uGGCAccGGCGCGCUGcuucuCGGCCaGGCg -3'
miRNA:   3'- -CCGUucCUGUGCGGCcu---GCCGGgCUG- -5'
26515 5' -60.8 NC_005357.1 + 34734 0.66 0.353836
Target:  5'- cGGCAAGccGGC-CGCCGaGGucaaGCCCGACg -3'
miRNA:   3'- -CCGUUC--CUGuGCGGC-CUgc--CGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 36453 0.66 0.357142
Target:  5'- aGGCAgAGGuguugcuguuugcuuACGCGCUGGACaauGGCCCc-- -3'
miRNA:   3'- -CCGU-UCC---------------UGUGCGGCCUG---CCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 17143 0.66 0.382624
Target:  5'- uGGCGAGGccgcuuugguacuuCACGUCGucGAUGcGCCCGAa -3'
miRNA:   3'- -CCGUUCCu-------------GUGCGGC--CUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 9312 0.66 0.387864
Target:  5'- cGGCGAccuggcGGcGCACGUCGGcGCGGCgggCGGCg -3'
miRNA:   3'- -CCGUU------CC-UGUGCGGCC-UGCCGg--GCUG- -5'
26515 5' -60.8 NC_005357.1 + 27964 0.66 0.387864
Target:  5'- uGGCGA--GCACGUccuCGGugGGCUgGGCc -3'
miRNA:   3'- -CCGUUccUGUGCG---GCCugCCGGgCUG- -5'
26515 5' -60.8 NC_005357.1 + 8641 0.66 0.387864
Target:  5'- uGGCGAGGu--CGCCGGccuucaucgcGCGG-UCGGCa -3'
miRNA:   3'- -CCGUUCCuguGCGGCC----------UGCCgGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 1340 0.66 0.387864
Target:  5'- cGCGAGGAa--GCCGuggucGGCGGCCUuGCg -3'
miRNA:   3'- cCGUUCCUgugCGGC-----CUGCCGGGcUG- -5'
26515 5' -60.8 NC_005357.1 + 5520 0.67 0.329732
Target:  5'- cGU-AGGACACGCCGG-CcGCCCa-- -3'
miRNA:   3'- cCGuUCCUGUGCGGCCuGcCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 42115 0.67 0.33763
Target:  5'- cGGUAcGG-CACGCCcuGGACGGaagagcgcgccuUCCGGCg -3'
miRNA:   3'- -CCGUuCCuGUGCGG--CCUGCC------------GGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 36653 0.69 0.258273
Target:  5'- uGGC-GGGACACGauGGucaaGGCCCuGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCggCCug--CCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 18566 0.69 0.258273
Target:  5'- cGGUgGAGGcCGCGCuCGcgguGACGGCCUGGCc -3'
miRNA:   3'- -CCG-UUCCuGUGCG-GC----CUGCCGGGCUG- -5'
26515 5' -60.8 NC_005357.1 + 42245 0.69 0.258273
Target:  5'- uGGCGGGGAUgACGCCGGcauucugcgcGCGGCagcuugGGCa -3'
miRNA:   3'- -CCGUUCCUG-UGCGGCC----------UGCCGgg----CUG- -5'
26515 5' -60.8 NC_005357.1 + 18847 0.68 0.278285
Target:  5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3'
miRNA:   3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5'
26515 5' -60.8 NC_005357.1 + 32006 0.68 0.285224
Target:  5'- uGCGAaacccucGACACGCUGGACGcCCaCGACa -3'
miRNA:   3'- cCGUUc------CUGUGCGGCCUGCcGG-GCUG- -5'
26515 5' -60.8 NC_005357.1 + 25571 0.68 0.2923
Target:  5'- cGGCGucGGAguugUACGCCGcGgucuGCGGCCCaGGCa -3'
miRNA:   3'- -CCGUu-CCU----GUGCGGC-C----UGCCGGG-CUG- -5'
26515 5' -60.8 NC_005357.1 + 32474 0.68 0.299512
Target:  5'- aGGUggGGGCG-GCC-GAUGcGCCCGAa -3'
miRNA:   3'- -CCGuuCCUGUgCGGcCUGC-CGGGCUg -5'
26515 5' -60.8 NC_005357.1 + 27700 0.67 0.314348
Target:  5'- aGGCc---GCGCGCCGGcaGCGGCUCGcCg -3'
miRNA:   3'- -CCGuuccUGUGCGGCC--UGCCGGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.