miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26516 3' -53.1 NC_005357.1 + 16619 1.1 0.001114
Target:  5'- gGCCCGGUGCAGAUCAACGAUACCGAGc -3'
miRNA:   3'- -CGGGCCACGUCUAGUUGCUAUGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 29795 0.73 0.379004
Target:  5'- cGCCaaaGGacgGCAG--CAGCGAUGCCGAGc -3'
miRNA:   3'- -CGGg--CCa--CGUCuaGUUGCUAUGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 15387 0.72 0.406946
Target:  5'- cGUCCGcGUGCGGGcCGGCGAagaUGCCGGa -3'
miRNA:   3'- -CGGGC-CACGUCUaGUUGCU---AUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 32519 0.72 0.436144
Target:  5'- cGCCC-GUGCAGGcUggUGAUGCCGGc -3'
miRNA:   3'- -CGGGcCACGUCUaGuuGCUAUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 24547 0.71 0.466515
Target:  5'- cGCgUGGUcgcGCAGcgCGGCGAUGgCGAGg -3'
miRNA:   3'- -CGgGCCA---CGUCuaGUUGCUAUgGCUC- -5'
26516 3' -53.1 NC_005357.1 + 11534 0.71 0.476879
Target:  5'- aUCCGGUGCAGuGUCGGCugggauAUGCCGAc -3'
miRNA:   3'- cGGGCCACGUC-UAGUUGc-----UAUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 35052 0.71 0.487357
Target:  5'- cGCCgCGGUGCccgccgcuGGAcgAACGAcGCCGAGg -3'
miRNA:   3'- -CGG-GCCACG--------UCUagUUGCUaUGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 31405 0.71 0.497942
Target:  5'- gGCCCGGUGCAGcagguguUCAuCGAcGCCa-- -3'
miRNA:   3'- -CGGGCCACGUCu------AGUuGCUaUGGcuc -5'
26516 3' -53.1 NC_005357.1 + 11428 0.7 0.541236
Target:  5'- aGCCgGcGUGCAGGUCGccgauaaggcGCGAcACCGGc -3'
miRNA:   3'- -CGGgC-CACGUCUAGU----------UGCUaUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 32851 0.69 0.574512
Target:  5'- cGCCUGGccGCAGA-CGGuCGGcGCCGAGa -3'
miRNA:   3'- -CGGGCCa-CGUCUaGUU-GCUaUGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 31098 0.68 0.630841
Target:  5'- cCUCGGUGCAGGcCGGCGAguggugCGAGa -3'
miRNA:   3'- cGGGCCACGUCUaGUUGCUaug---GCUC- -5'
26516 3' -53.1 NC_005357.1 + 27630 0.68 0.642152
Target:  5'- cGCCgaGGUGCAGGUuucCAGCGAcAUCGuGa -3'
miRNA:   3'- -CGGg-CCACGUCUA---GUUGCUaUGGCuC- -5'
26516 3' -53.1 NC_005357.1 + 42239 0.68 0.653452
Target:  5'- cGCCCGGcagcgUGaCGGugccCAGCGAcACCGGGg -3'
miRNA:   3'- -CGGGCC-----AC-GUCua--GUUGCUaUGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 13467 0.68 0.663606
Target:  5'- gGCgCGGUGuCGGGcaugaccUgGGCGAUGCCGAc -3'
miRNA:   3'- -CGgGCCAC-GUCU-------AgUUGCUAUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 37072 0.68 0.664732
Target:  5'- gGCgCGGUGCAGGcggccacgCAgcGCGAUGCCa-- -3'
miRNA:   3'- -CGgGCCACGUCUa-------GU--UGCUAUGGcuc -5'
26516 3' -53.1 NC_005357.1 + 10941 0.68 0.664732
Target:  5'- gGCCuCGG-GCAGuugcgCGGCGAcaGCCGGGg -3'
miRNA:   3'- -CGG-GCCaCGUCua---GUUGCUa-UGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 23953 0.68 0.67598
Target:  5'- cGCCCGGcG-AGGUCGGCauuUGCCGAu -3'
miRNA:   3'- -CGGGCCaCgUCUAGUUGcu-AUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 32571 0.67 0.698332
Target:  5'- cGCgCCGGUGCcacgcucAUCGACGccgaaACCGAGg -3'
miRNA:   3'- -CG-GGCCACGuc-----UAGUUGCua---UGGCUC- -5'
26516 3' -53.1 NC_005357.1 + 33614 0.67 0.709413
Target:  5'- gGCCCGacccaGCAGAUCGguacugaccgGCGcgGCCGAc -3'
miRNA:   3'- -CGGGCca---CGUCUAGU----------UGCuaUGGCUc -5'
26516 3' -53.1 NC_005357.1 + 22152 0.67 0.731321
Target:  5'- -aCUGGUGCGGG-CAACGAcgGCCa-- -3'
miRNA:   3'- cgGGCCACGUCUaGUUGCUa-UGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.