Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26516 | 5' | -62.3 | NC_005357.1 | + | 22233 | 0.66 | 0.263508 |
Target: 5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3' miRNA: 3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 9215 | 0.68 | 0.203802 |
Target: 5'- -gCGCGGCgCA-CGUucUGCgGCgCGCCCGg -3' miRNA: 3'- uaGCGCCG-GUaGCA--ACGgCG-GCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 3744 | 0.68 | 0.209201 |
Target: 5'- gGUgGUgGGCaCGUCGgUGCCGCCGCUgGa -3' miRNA: 3'- -UAgCG-CCG-GUAGCaACGGCGGCGGgU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 19154 | 0.68 | 0.214723 |
Target: 5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3' miRNA: 3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 38238 | 0.68 | 0.214723 |
Target: 5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3' miRNA: 3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 14297 | 0.67 | 0.244232 |
Target: 5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3' miRNA: 3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 12722 | 0.67 | 0.250524 |
Target: 5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3' miRNA: 3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 28837 | 0.67 | 0.250524 |
Target: 5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3' miRNA: 3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 12625 | 0.67 | 0.256949 |
Target: 5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3' miRNA: 3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 29994 | 0.69 | 0.190328 |
Target: 5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3' miRNA: 3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 38002 | 0.69 | 0.169305 |
Target: 5'- uGUUGCGGCCGg-GUacgaccuacgacUGCCGCaCGCUCAa -3' miRNA: 3'- -UAGCGCCGGUagCA------------ACGGCG-GCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 33848 | 0.69 | 0.169305 |
Target: 5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3' miRNA: 3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 6414 | 0.73 | 0.092542 |
Target: 5'- aGUCGCGGCCcauGUCGUUGgCGCCuGUCaCGg -3' miRNA: 3'- -UAGCGCCGG---UAGCAACgGCGG-CGG-GU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 11565 | 0.73 | 0.095169 |
Target: 5'- -cCGcCGGUCAUCGaaGCCauGCCGCCCAg -3' miRNA: 3'- uaGC-GCCGGUAGCaaCGG--CGGCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 7555 | 0.71 | 0.131593 |
Target: 5'- cUCGCGGCCggGUCGUacuuaaucggauagUaGCCGCCGCgUAg -3' miRNA: 3'- uAGCGCCGG--UAGCA--------------A-CGGCGGCGgGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 9992 | 0.7 | 0.147959 |
Target: 5'- -gCGUGGCgggGUCGaaagUGCCGCgCGCCCGg -3' miRNA: 3'- uaGCGCCGg--UAGCa---ACGGCG-GCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 32313 | 0.7 | 0.149572 |
Target: 5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 20180 | 0.7 | 0.152022 |
Target: 5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3' miRNA: 3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 3875 | 0.7 | 0.156187 |
Target: 5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3' miRNA: 3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5' |
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26516 | 5' | -62.3 | NC_005357.1 | + | 32355 | 0.69 | 0.160454 |
Target: 5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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