miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 8213 0.66 0.722191
Target:  5'- gGCCUCGuagucGCGCUGGucggcGGCCGUCaGCa -3'
miRNA:   3'- -CGGAGCugga-UGUGGCU-----UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 14912 0.66 0.689308
Target:  5'- aCCcCGACC-GCGCCGAgaagcuggcGGCCGagGCc -3'
miRNA:   3'- cGGaGCUGGaUGUGGCU---------UCGGUagCG- -5'
26517 3' -54.2 NC_005357.1 + 30399 0.66 0.743669
Target:  5'- cGCUgggcaaGACCU-CGCCGGccacGGCCG-CGCu -3'
miRNA:   3'- -CGGag----CUGGAuGUGGCU----UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 28826 0.66 0.741541
Target:  5'- cGCCgucgucggguugCGGCCggACuuGCCGAAGCUGUCccaGCg -3'
miRNA:   3'- -CGGa-----------GCUGGa-UG--UGGCUUCGGUAG---CG- -5'
26517 3' -54.2 NC_005357.1 + 17860 0.66 0.743669
Target:  5'- gGCCUCGucGCCcaggUAgGCCaGGGCCAgaUUGCa -3'
miRNA:   3'- -CGGAGC--UGG----AUgUGGcUUCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 29084 0.66 0.732982
Target:  5'- uCCUCGG---GCGCCGAGGUCAggcccgUGCg -3'
miRNA:   3'- cGGAGCUggaUGUGGCUUCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 18515 0.66 0.689308
Target:  5'- cGCCUauGCCgGCAUgGAAGCCGcgggCGUg -3'
miRNA:   3'- -CGGAgcUGGaUGUGgCUUCGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 37850 0.66 0.743669
Target:  5'- uCCUCG-CCUggcGCACCG-AGCag-CGCc -3'
miRNA:   3'- cGGAGCuGGA---UGUGGCuUCGguaGCG- -5'
26517 3' -54.2 NC_005357.1 + 19140 0.66 0.731908
Target:  5'- -gUUCGGCCcccACACCGucAGCCAgauggaugcguugUCGCu -3'
miRNA:   3'- cgGAGCUGGa--UGUGGCu-UCGGU-------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 14616 0.66 0.722191
Target:  5'- uGCgUCGGCUuccaUGCuuCCGgcGCCGgugCGCa -3'
miRNA:   3'- -CGgAGCUGG----AUGu-GGCuuCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 26486 0.66 0.689308
Target:  5'- gGCCUacgCGAag-GCGCCGcAGCCuAUCGUg -3'
miRNA:   3'- -CGGA---GCUggaUGUGGCuUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 31659 0.66 0.732982
Target:  5'- cGCUuggUgGGCCUACACCG--GCCAcaaGCa -3'
miRNA:   3'- -CGG---AgCUGGAUGUGGCuuCGGUag-CG- -5'
26517 3' -54.2 NC_005357.1 + 16179 0.66 0.743669
Target:  5'- cGCgUCGGaguuCACCGAcGCCA-CGCg -3'
miRNA:   3'- -CGgAGCUggauGUGGCUuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 29351 0.66 0.700342
Target:  5'- uCCUCGaACCacGCGCCGGuGGCC-UUGCc -3'
miRNA:   3'- cGGAGC-UGGa-UGUGGCU-UCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 8625 0.66 0.721107
Target:  5'- uUCUCGGCC-GCugCGGuggcgaggucgccGGCCuucAUCGCg -3'
miRNA:   3'- cGGAGCUGGaUGugGCU-------------UCGG---UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 38008 0.66 0.689308
Target:  5'- gGCCggguaCGACCUACgacuGCCGcacgcucaAGGCCcggCGCg -3'
miRNA:   3'- -CGGa----GCUGGAUG----UGGC--------UUCGGua-GCG- -5'
26517 3' -54.2 NC_005357.1 + 31506 0.66 0.711307
Target:  5'- uGCCgcCGGCgUGCugCuGGGCC-UCGCu -3'
miRNA:   3'- -CGGa-GCUGgAUGugGcUUCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 14328 0.66 0.732982
Target:  5'- cGCCUUGGCUgaACugCcGGGCCugcugguUCGCg -3'
miRNA:   3'- -CGGAGCUGGa-UGugGcUUCGGu------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 11018 0.66 0.721107
Target:  5'- gGCgUCGAUgaacaccugCUGCACCG-GGCCGUucucggcCGCa -3'
miRNA:   3'- -CGgAGCUG---------GAUGUGGCuUCGGUA-------GCG- -5'
26517 3' -54.2 NC_005357.1 + 23300 0.66 0.69373
Target:  5'- uGCCUguuugCGGCCgGCACUGGccgggaugacgugguAGCCG-CGCa -3'
miRNA:   3'- -CGGA-----GCUGGaUGUGGCU---------------UCGGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.