miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 19218 0.66 0.732982
Target:  5'- gGCCgaGGCCgaauuCACCGAcgaGGCCgaccugcugcuGUCGCa -3'
miRNA:   3'- -CGGagCUGGau---GUGGCU---UCGG-----------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 26879 0.66 0.711307
Target:  5'- cGCCaUUGACCUGgACgugGAGGCCGgcaccgUGCa -3'
miRNA:   3'- -CGG-AGCUGGAUgUGg--CUUCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 7641 0.66 0.715671
Target:  5'- gGCCUUGGCCUugcagaaucgacauuGCuucucACCGggGgCCAggUCGUc -3'
miRNA:   3'- -CGGAGCUGGA---------------UG-----UGGCuuC-GGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 34556 0.66 0.732982
Target:  5'- uCC-CGACC-AUcgGCCGAAGCCugaacCGCg -3'
miRNA:   3'- cGGaGCUGGaUG--UGGCUUCGGua---GCG- -5'
26517 3' -54.2 NC_005357.1 + 25339 0.66 0.722191
Target:  5'- gGCC-CGGCCgagaaccGCGCCGGcuucGCCuUCGUg -3'
miRNA:   3'- -CGGaGCUGGa------UGUGGCUu---CGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4864 0.66 0.732982
Target:  5'- aGCUUCcaauCCU-CGCCGGcgAGCCA-CGCa -3'
miRNA:   3'- -CGGAGcu--GGAuGUGGCU--UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 5703 0.66 0.743669
Target:  5'- uCCUUGGCCUugucggucgGCACCuuGAGGauGUCGCa -3'
miRNA:   3'- cGGAGCUGGA---------UGUGG--CUUCggUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 33110 0.66 0.729755
Target:  5'- cGCCgcgcCGACgUGCGCCGccaggucgccgaggAAGUCAaugCGCa -3'
miRNA:   3'- -CGGa---GCUGgAUGUGGC--------------UUCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 17860 0.66 0.743669
Target:  5'- gGCCUCGucGCCcaggUAgGCCaGGGCCAgaUUGCa -3'
miRNA:   3'- -CGGAGC--UGG----AUgUGGcUUCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 19071 0.66 0.743669
Target:  5'- cGCCacCGugUUcaucgGCGgCGAGGCCGUCGa -3'
miRNA:   3'- -CGGa-GCugGA-----UGUgGCUUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 8213 0.66 0.722191
Target:  5'- gGCCUCGuagucGCGCUGGucggcGGCCGUCaGCa -3'
miRNA:   3'- -CGGAGCugga-UGUGGCU-----UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 16640 0.66 0.732982
Target:  5'- aCCgagCGcGCCgcgcGCAUCGcGGCCAUCGUu -3'
miRNA:   3'- cGGa--GC-UGGa---UGUGGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 27597 0.66 0.722191
Target:  5'- cGCCaacggcaUCGACCUGggcgaaggcagcgcCGCCGAGGUgcagguuuccagcgaCAUCGUg -3'
miRNA:   3'- -CGG-------AGCUGGAU--------------GUGGCUUCG---------------GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 26486 0.66 0.689308
Target:  5'- gGCCUacgCGAag-GCGCCGcAGCCuAUCGUg -3'
miRNA:   3'- -CGGA---GCUggaUGUGGCuUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 26547 0.66 0.732982
Target:  5'- gGCCUC-ACCUACGugcCCGAgcaacagaucGGCgCGUgGCa -3'
miRNA:   3'- -CGGAGcUGGAUGU---GGCU----------UCG-GUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 24802 0.66 0.720021
Target:  5'- uGCCgcacgaugCGGCaaACAUCGAGGCCGguaucgacaacgCGCa -3'
miRNA:   3'- -CGGa-------GCUGgaUGUGGCUUCGGUa-----------GCG- -5'
26517 3' -54.2 NC_005357.1 + 24566 0.66 0.732982
Target:  5'- gGCCcUGGCCUACcugggcgaCGAGGCCAcggUgGCg -3'
miRNA:   3'- -CGGaGCUGGAUGug------GCUUCGGU---AgCG- -5'
26517 3' -54.2 NC_005357.1 + 6585 0.67 0.660384
Target:  5'- cGCCUCGGCCaggggGCugCGGucuuugucgaugaccAGCgGgCGCg -3'
miRNA:   3'- -CGGAGCUGGa----UGugGCU---------------UCGgUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18435 0.67 0.655912
Target:  5'- cGCCgaguCCUGCACCGAAaacguGaCgGUCGCg -3'
miRNA:   3'- -CGGagcuGGAUGUGGCUU-----C-GgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11998 0.67 0.655912
Target:  5'- gGCCuuuuccacgUCGGCCaGCAgCGcGGCCGUgGCc -3'
miRNA:   3'- -CGG---------AGCUGGaUGUgGCuUCGGUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.