Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26517 | 3' | -54.2 | NC_005357.1 | + | 17368 | 0.67 | 0.667082 |
Target: 5'- cGCCUgCGacagguauGCCUGCAUCGc-GCCGaCGCa -3' miRNA: 3'- -CGGA-GC--------UGGAUGUGGCuuCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 1348 | 0.67 | 0.667082 |
Target: 5'- aGCCguggucggCGGCCUugcgcauccgGCgACCGAAGCgCAaguccUCGCg -3' miRNA: 3'- -CGGa-------GCUGGA----------UG-UGGCUUCG-GU-----AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 8387 | 0.67 | 0.633515 |
Target: 5'- gGCCUCGcGCUgGCugCGuAGCCAgUCGg -3' miRNA: 3'- -CGGAGC-UGGaUGugGCuUCGGU-AGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 28205 | 0.67 | 0.633515 |
Target: 5'- cGCCuuguccaggUCGGCC-ACGCCGAcGaCCAcgCGCg -3' miRNA: 3'- -CGG---------AGCUGGaUGUGGCUuC-GGUa-GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 6635 | 0.67 | 0.64472 |
Target: 5'- aGCUUCGcGCgCUugGCCGGAGUguCcgCGCu -3' miRNA: 3'- -CGGAGC-UG-GAugUGGCUUCG--GuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 11998 | 0.67 | 0.655912 |
Target: 5'- gGCCuuuuccacgUCGGCCaGCAgCGcGGCCGUgGCc -3' miRNA: 3'- -CGG---------AGCUGGaUGUgGCuUCGGUAgCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 40448 | 0.67 | 0.655912 |
Target: 5'- aCCUCGcgcGCCUACAgCGugccuucccccaGGGCCG-CGCg -3' miRNA: 3'- cGGAGC---UGGAUGUgGC------------UUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 18435 | 0.67 | 0.655912 |
Target: 5'- cGCCgaguCCUGCACCGAAaacguGaCgGUCGCg -3' miRNA: 3'- -CGGagcuGGAUGUGGCUU-----C-GgUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 6585 | 0.67 | 0.660384 |
Target: 5'- cGCCUCGGCCaggggGCugCGGucuuugucgaugaccAGCgGgCGCg -3' miRNA: 3'- -CGGAGCUGGa----UGugGCU---------------UCGgUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 28156 | 0.67 | 0.678218 |
Target: 5'- uGCCgguggucagaUCGACC-ACGCCGuuGCCcaCGCc -3' miRNA: 3'- -CGG----------AGCUGGaUGUGGCuuCGGuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 41785 | 0.67 | 0.667082 |
Target: 5'- aGCCUUGggcACCgacucgACGCCGGAcGCCGUguccacggCGCu -3' miRNA: 3'- -CGGAGC---UGGa-----UGUGGCUU-CGGUA--------GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 18405 | 0.67 | 0.655912 |
Target: 5'- cGCgUCG-CCUuCGCUGAauuGGCCGaCGCg -3' miRNA: 3'- -CGgAGCuGGAuGUGGCU---UCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 376 | 0.67 | 0.678218 |
Target: 5'- -gCUUGGCCU--GCCGAuugagcgcGGCCAgcgCGCg -3' miRNA: 3'- cgGAGCUGGAugUGGCU--------UCGGUa--GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 23393 | 0.67 | 0.678218 |
Target: 5'- cGCCggCGGCCgcUACCaGGGCUAcCGCa -3' miRNA: 3'- -CGGa-GCUGGauGUGGcUUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 11107 | 0.67 | 0.667082 |
Target: 5'- cGCCgCGACCUGggauuccaGCCG-GGCCAccaCGCg -3' miRNA: 3'- -CGGaGCUGGAUg-------UGGCuUCGGUa--GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 2431 | 0.67 | 0.633515 |
Target: 5'- aCCUCGAUUUgaagGCGCCGAaacugcGGCCcaggCGCu -3' miRNA: 3'- cGGAGCUGGA----UGUGGCU------UCGGua--GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 23721 | 0.67 | 0.633515 |
Target: 5'- cGCCguacCGAUgcgCUGCugcugACCGAGGCCcgCGUg -3' miRNA: 3'- -CGGa---GCUG---GAUG-----UGGCUUCGGuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 32553 | 0.67 | 0.655912 |
Target: 5'- cGCCU-GGCCgagaagcagcGCGCCGguGCCA-CGCu -3' miRNA: 3'- -CGGAgCUGGa---------UGUGGCuuCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 4364 | 0.67 | 0.655912 |
Target: 5'- gGCCggaCGGCaggcggaUGCGCagccaGgcGCCGUCGCg -3' miRNA: 3'- -CGGa--GCUGg------AUGUGg----CuuCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33662 | 0.67 | 0.655912 |
Target: 5'- cGCCgCGugCUGC-CCGAAGCgGcaCGUg -3' miRNA: 3'- -CGGaGCugGAUGuGGCUUCGgUa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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