miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 16231 1.13 0.00051
Target:  5'- cGCCUCGACCUACACCGAAGCCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGAUGUGGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18254 0.83 0.07048
Target:  5'- uGCCggucaCGACCUGCGCCGAgaacuugccGGCCGUCaGCg -3'
miRNA:   3'- -CGGa----GCUGGAUGUGGCU---------UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 23225 0.79 0.140869
Target:  5'- gGCCUCGGCCUcggcCACCGAccgcGCC-UCGCu -3'
miRNA:   3'- -CGGAGCUGGAu---GUGGCUu---CGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18866 0.79 0.144894
Target:  5'- cGCC-CGcACCUGCcggcgaugucgGCCGAGGCCAUCGa -3'
miRNA:   3'- -CGGaGC-UGGAUG-----------UGGCUUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 24032 0.77 0.196552
Target:  5'- cGCCgacgUGGCCgcCACCGgcGCCAUCGg -3'
miRNA:   3'- -CGGa---GCUGGauGUGGCuuCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 36865 0.76 0.213203
Target:  5'- uGCC--GGCCUcgACAUCGAAGCCAUgCGCg -3'
miRNA:   3'- -CGGagCUGGA--UGUGGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 37628 0.76 0.213203
Target:  5'- aCCUCuacaagcuGGCCUACGCCaAAGCCuUCGCg -3'
miRNA:   3'- cGGAG--------CUGGAUGUGGcUUCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 21477 0.74 0.270521
Target:  5'- gGCCUCGACCaUGCGCUGAAacGUCAauUCGa -3'
miRNA:   3'- -CGGAGCUGG-AUGUGGCUU--CGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 33191 0.74 0.277604
Target:  5'- cCCUCGGCaCggcCACCGcuGGCUAUCGCg -3'
miRNA:   3'- cGGAGCUG-Gau-GUGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 36045 0.74 0.284834
Target:  5'- gGCCggcCGGCCUGCGCCuGAuugccgacgugGGCCGguUCGCc -3'
miRNA:   3'- -CGGa--GCUGGAUGUGG-CU-----------UCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 35361 0.73 0.306639
Target:  5'- aGCCUguucaaaCGACgCUGCcgcCCGAGGCCAUgCGCc -3'
miRNA:   3'- -CGGA-------GCUG-GAUGu--GGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 17859 0.73 0.307413
Target:  5'- gGCC-CGACCgugGCCGGccucGCCAUCGCc -3'
miRNA:   3'- -CGGaGCUGGaugUGGCUu---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 5771 0.73 0.313661
Target:  5'- cGCCagGGCCUugACCaucgugucccGCCAUCGCg -3'
miRNA:   3'- -CGGagCUGGAugUGGcuu-------CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18057 0.73 0.31841
Target:  5'- gGCCUuaccggcgcggggugCGugCUGggcCGCCGAAGCCggCGCg -3'
miRNA:   3'- -CGGA---------------GCugGAU---GUGGCUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 25293 0.73 0.326444
Target:  5'- uGCCUUGAggucgugcggccggcCCUGcCACCGgcGCuCGUCGCc -3'
miRNA:   3'- -CGGAGCU---------------GGAU-GUGGCuuCG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 12446 0.73 0.331336
Target:  5'- gGCCcguUCGACggCUGCAUCcAGGCCGUCGUg -3'
miRNA:   3'- -CGG---AGCUG--GAUGUGGcUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 34212 0.73 0.331336
Target:  5'- gGCCgcCGACCaGCGCgacuaCGAGGCCGUgCGCg -3'
miRNA:   3'- -CGGa-GCUGGaUGUG-----GCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 38399 0.73 0.339609
Target:  5'- cGCCgCGGCCgGCuuUGAAGCCuAUCGCu -3'
miRNA:   3'- -CGGaGCUGGaUGugGCUUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11337 0.73 0.348031
Target:  5'- cGCC--GGCCUGCACCGAGGUgAgcaGCg -3'
miRNA:   3'- -CGGagCUGGAUGUGGCUUCGgUag-CG- -5'
26517 3' -54.2 NC_005357.1 + 13996 0.73 0.351441
Target:  5'- gGCCUCGugCUGCACagcuugaccacggaaCGAGGUCAggaugUCGUu -3'
miRNA:   3'- -CGGAGCugGAUGUG---------------GCUUCGGU-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.