miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 37774 0.72 0.356601
Target:  5'- gGCaUCGACCUugACgCGAuGGCCGaCGCa -3'
miRNA:   3'- -CGgAGCUGGAugUG-GCU-UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 7449 0.72 0.356601
Target:  5'- gGCUUCGGCCUuCGCgCGAauGGCC-UUGCa -3'
miRNA:   3'- -CGGAGCUGGAuGUG-GCU--UCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 28444 0.72 0.356601
Target:  5'- aGCCgUCGAUUUccgGCACguacaUGAGGCCGUCGCc -3'
miRNA:   3'- -CGG-AGCUGGA---UGUG-----GCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 17722 0.72 0.374181
Target:  5'- gGCC-CGACCgacugGCACCGAuggacAGCCugggCGUg -3'
miRNA:   3'- -CGGaGCUGGa----UGUGGCU-----UCGGua--GCG- -5'
26517 3' -54.2 NC_005357.1 + 4185 0.72 0.374181
Target:  5'- cGCCUCGAuggcgggcaUgUugGCCGcGAGCaCGUCGCg -3'
miRNA:   3'- -CGGAGCU---------GgAugUGGC-UUCG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 491 0.72 0.383188
Target:  5'- uGCCUCGGCagcauaCUGCGCCGcGGCgGcUUGCa -3'
miRNA:   3'- -CGGAGCUG------GAUGUGGCuUCGgU-AGCG- -5'
26517 3' -54.2 NC_005357.1 + 28545 0.72 0.383188
Target:  5'- gGCa-CGACCuUGCgGCCGccGGCCAUCGCg -3'
miRNA:   3'- -CGgaGCUGG-AUG-UGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 7641 0.72 0.392339
Target:  5'- cGgCUCGACCcACGCCGGcuccuuGCCGUacaCGCg -3'
miRNA:   3'- -CgGAGCUGGaUGUGGCUu-----CGGUA---GCG- -5'
26517 3' -54.2 NC_005357.1 + 13233 0.71 0.40163
Target:  5'- cGUC-CGACCUGCcggucaucACCGAGGCCcaaGUCGa -3'
miRNA:   3'- -CGGaGCUGGAUG--------UGGCUUCGG---UAGCg -5'
26517 3' -54.2 NC_005357.1 + 7708 0.71 0.405386
Target:  5'- cCCUCGaagugaucccacaccGCCUGCACCGcuuGCCAUuccugCGCa -3'
miRNA:   3'- cGGAGC---------------UGGAUGUGGCuu-CGGUA-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 36808 0.71 0.411061
Target:  5'- aCCUCG-CCaACAUCGAcGCCGUgGCu -3'
miRNA:   3'- cGGAGCuGGaUGUGGCUuCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 9587 0.71 0.411061
Target:  5'- cGUCUgCGGCCa--GgCGAAGCCGUUGCg -3'
miRNA:   3'- -CGGA-GCUGGaugUgGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 20738 0.71 0.411061
Target:  5'- aCCUCGACCUgucGCACCuucuGGCUgacAUCGUg -3'
miRNA:   3'- cGGAGCUGGA---UGUGGcu--UCGG---UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 34618 0.71 0.420627
Target:  5'- cGCCUCGACCauauCAgCGAGugggacauGCcCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGau--GUgGCUU--------CG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 30138 0.71 0.420627
Target:  5'- cGCCgcCGGCCUGCACCGcgucGGaCAUCaGCg -3'
miRNA:   3'- -CGGa-GCUGGAUGUGGCu---UCgGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 33956 0.71 0.427403
Target:  5'- cGCgUCGGCUgcgGCAUCGcAGGCCAccucgacgccgacaUCGCg -3'
miRNA:   3'- -CGgAGCUGGa--UGUGGC-UUCGGU--------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 18238 0.71 0.428376
Target:  5'- cGCCUaCGugCUcgcgcucauggacACGCCGAagcgcgcAGCCGUCGa -3'
miRNA:   3'- -CGGA-GCugGA-------------UGUGGCU-------UCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 33569 0.71 0.430327
Target:  5'- cGCUUCGug--GCgACCGAGGCCAaCGCg -3'
miRNA:   3'- -CGGAGCuggaUG-UGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 24753 0.71 0.430327
Target:  5'- cGCUUCG-CCUACgcccagcccGCCGAcGCCAUCa- -3'
miRNA:   3'- -CGGAGCuGGAUG---------UGGCUuCGGUAGcg -5'
26517 3' -54.2 NC_005357.1 + 476 0.71 0.431304
Target:  5'- cGCUUCGACaaucgccaguuucGCGCUGAacaaguccacguugGGCCAUCGCu -3'
miRNA:   3'- -CGGAGCUGga-----------UGUGGCU--------------UCGGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.