miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 26156 0.71 0.440156
Target:  5'- aGCCUuccgggUGGCC-GCGCgCGAGGCCAaCGCc -3'
miRNA:   3'- -CGGA------GCUGGaUGUG-GCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 23654 0.71 0.447113
Target:  5'- gGCCUCGACgCUGacgauggaagaaauCGCCGGcaaaaaGGUgGUCGCg -3'
miRNA:   3'- -CGGAGCUG-GAU--------------GUGGCU------UCGgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 13392 0.71 0.450112
Target:  5'- cGCCgguggguaUCGACCUG-GCCGAAGCgCggCGCc -3'
miRNA:   3'- -CGG--------AGCUGGAUgUGGCUUCG-GuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 31438 0.71 0.450112
Target:  5'- cGCCaCGAUCUGCGgCGuGGUCAUCGg -3'
miRNA:   3'- -CGGaGCUGGAUGUgGCuUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 7771 0.71 0.450112
Target:  5'- aCCggcgCGAUCUGCGCCGgcGuCCAcccuUCGCc -3'
miRNA:   3'- cGGa---GCUGGAUGUGGCuuC-GGU----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 20471 0.71 0.450112
Target:  5'- cCUUCGGCgaAgGCCauAGCCAUCGCg -3'
miRNA:   3'- cGGAGCUGgaUgUGGcuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 37120 0.7 0.460191
Target:  5'- gGCCggCGACCUggaaaAUAUCGAcGCCGUgGCc -3'
miRNA:   3'- -CGGa-GCUGGA-----UGUGGCUuCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 11139 0.7 0.460191
Target:  5'- aGCaguUCGGCCUGCugCuGGGCCGccugCGCa -3'
miRNA:   3'- -CGg--AGCUGGAUGugGcUUCGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 10324 0.7 0.460191
Target:  5'- aGUUUCG-CC-AgGCCGuAGCCGUCGCu -3'
miRNA:   3'- -CGGAGCuGGaUgUGGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4638 0.7 0.470389
Target:  5'- -gCUgGGCC-ACGCUGcgucGGCCAUCGCg -3'
miRNA:   3'- cgGAgCUGGaUGUGGCu---UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 27118 0.7 0.4807
Target:  5'- uGCCUUaGCCUGCaaaGCUGAcGCCG-CGCg -3'
miRNA:   3'- -CGGAGcUGGAUG---UGGCUuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 24483 0.7 0.49112
Target:  5'- -gCUUGGCCUGCGCCagGAAGUCGUagggGCu -3'
miRNA:   3'- cgGAGCUGGAUGUGG--CUUCGGUAg---CG- -5'
26517 3' -54.2 NC_005357.1 + 25815 0.7 0.501643
Target:  5'- uCgUUGAUCUGCACCGGGccGCCGUUGg -3'
miRNA:   3'- cGgAGCUGGAUGUGGCUU--CGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 17444 0.7 0.501643
Target:  5'- gGCCcCG-CCaGCAUCGAGGCCAggUGCc -3'
miRNA:   3'- -CGGaGCuGGaUGUGGCUUCGGUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 42079 0.7 0.501643
Target:  5'- gGCCUggcggaCGGCCUGCugCGcgacGCCAcCGCc -3'
miRNA:   3'- -CGGA------GCUGGAUGugGCuu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 6283 0.7 0.501643
Target:  5'- cGCUUUGGCUgggGCGCCGggGCUuaucuccggUGCg -3'
miRNA:   3'- -CGGAGCUGGa--UGUGGCuuCGGua-------GCG- -5'
26517 3' -54.2 NC_005357.1 + 37132 0.69 0.511198
Target:  5'- gGCCUCGACCUGCcagacaugcagcaAUCGAcGCUGgaacgaCGCa -3'
miRNA:   3'- -CGGAGCUGGAUG-------------UGGCUuCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 3777 0.69 0.512264
Target:  5'- aGCCUCGGUCgu-GCCGAAaGCCAgCGCc -3'
miRNA:   3'- -CGGAGCUGGaugUGGCUU-CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 8463 0.69 0.512264
Target:  5'- cGUCgaggUGGCCUGCgauGCCGcAGCCGaCGCg -3'
miRNA:   3'- -CGGa---GCUGGAUG---UGGCuUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 23555 0.69 0.512264
Target:  5'- gGCCUCGGCCgACAUCGccGGCaggUGCg -3'
miRNA:   3'- -CGGAGCUGGaUGUGGCu-UCGguaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.