Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26517 | 3' | -54.2 | NC_005357.1 | + | 37850 | 0.66 | 0.743669 |
Target: 5'- uCCUCG-CCUggcGCACCG-AGCag-CGCc -3' miRNA: 3'- cGGAGCuGGA---UGUGGCuUCGguaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 16179 | 0.66 | 0.743669 |
Target: 5'- cGCgUCGGaguuCACCGAcGCCA-CGCg -3' miRNA: 3'- -CGgAGCUggauGUGGCUuCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 5703 | 0.66 | 0.743669 |
Target: 5'- uCCUUGGCCUugucggucgGCACCuuGAGGauGUCGCa -3' miRNA: 3'- cGGAGCUGGA---------UGUGG--CUUCggUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 30399 | 0.66 | 0.743669 |
Target: 5'- cGCUgggcaaGACCU-CGCCGGccacGGCCG-CGCu -3' miRNA: 3'- -CGGag----CUGGAuGUGGCU----UCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 19071 | 0.66 | 0.743669 |
Target: 5'- cGCCacCGugUUcaucgGCGgCGAGGCCGUCGa -3' miRNA: 3'- -CGGa-GCugGA-----UGUgGCUUCGGUAGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17860 | 0.66 | 0.743669 |
Target: 5'- gGCCUCGucGCCcaggUAgGCCaGGGCCAgaUUGCa -3' miRNA: 3'- -CGGAGC--UGG----AUgUGGcUUCGGU--AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 28826 | 0.66 | 0.741541 |
Target: 5'- cGCCgucgucggguugCGGCCggACuuGCCGAAGCUGUCccaGCg -3' miRNA: 3'- -CGGa-----------GCUGGa-UG--UGGCUUCGGUAG---CG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 24566 | 0.66 | 0.732982 |
Target: 5'- gGCCcUGGCCUACcugggcgaCGAGGCCAcggUgGCg -3' miRNA: 3'- -CGGaGCUGGAUGug------GCUUCGGU---AgCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 14328 | 0.66 | 0.732982 |
Target: 5'- cGCCUUGGCUgaACugCcGGGCCugcugguUCGCg -3' miRNA: 3'- -CGGAGCUGGa-UGugGcUUCGGu------AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 29084 | 0.66 | 0.732982 |
Target: 5'- uCCUCGG---GCGCCGAGGUCAggcccgUGCg -3' miRNA: 3'- cGGAGCUggaUGUGGCUUCGGUa-----GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 31659 | 0.66 | 0.732982 |
Target: 5'- cGCUuggUgGGCCUACACCG--GCCAcaaGCa -3' miRNA: 3'- -CGG---AgCUGGAUGUGGCuuCGGUag-CG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 16640 | 0.66 | 0.732982 |
Target: 5'- aCCgagCGcGCCgcgcGCAUCGcGGCCAUCGUu -3' miRNA: 3'- cGGa--GC-UGGa---UGUGGCuUCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 34556 | 0.66 | 0.732982 |
Target: 5'- uCC-CGACC-AUcgGCCGAAGCCugaacCGCg -3' miRNA: 3'- cGGaGCUGGaUG--UGGCUUCGGua---GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 26547 | 0.66 | 0.732982 |
Target: 5'- gGCCUC-ACCUACGugcCCGAgcaacagaucGGCgCGUgGCa -3' miRNA: 3'- -CGGAGcUGGAUGU---GGCU----------UCG-GUAgCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 19218 | 0.66 | 0.732982 |
Target: 5'- gGCCgaGGCCgaauuCACCGAcgaGGCCgaccugcugcuGUCGCa -3' miRNA: 3'- -CGGagCUGGau---GUGGCU---UCGG-----------UAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 4864 | 0.66 | 0.732982 |
Target: 5'- aGCUUCcaauCCU-CGCCGGcgAGCCA-CGCa -3' miRNA: 3'- -CGGAGcu--GGAuGUGGCU--UCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 19140 | 0.66 | 0.731908 |
Target: 5'- -gUUCGGCCcccACACCGucAGCCAgauggaugcguugUCGCu -3' miRNA: 3'- cgGAGCUGGa--UGUGGCu-UCGGU-------------AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33110 | 0.66 | 0.729755 |
Target: 5'- cGCCgcgcCGACgUGCGCCGccaggucgccgaggAAGUCAaugCGCa -3' miRNA: 3'- -CGGa---GCUGgAUGUGGC--------------UUCGGUa--GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 26299 | 0.66 | 0.726519 |
Target: 5'- gGCCgcaGuCCUACGUCGggGCCAccgacgugcagccggUCGUg -3' miRNA: 3'- -CGGag-CuGGAUGUGGCuuCGGU---------------AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 1763 | 0.66 | 0.722191 |
Target: 5'- gGCC--GGCCUGCGCCu-GGCgCGUCGg -3' miRNA: 3'- -CGGagCUGGAUGUGGcuUCG-GUAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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