miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 23393 0.67 0.678218
Target:  5'- cGCCggCGGCCgcUACCaGGGCUAcCGCa -3'
miRNA:   3'- -CGGa-GCUGGauGUGGcUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 1348 0.67 0.667082
Target:  5'- aGCCguggucggCGGCCUugcgcauccgGCgACCGAAGCgCAaguccUCGCg -3'
miRNA:   3'- -CGGa-------GCUGGA----------UG-UGGCUUCG-GU-----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 17368 0.67 0.667082
Target:  5'- cGCCUgCGacagguauGCCUGCAUCGc-GCCGaCGCa -3'
miRNA:   3'- -CGGA-GC--------UGGAUGUGGCuuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 31005 0.67 0.667082
Target:  5'- cGCg-CGACCUguccacgggcuuGCcgGCCGAGGCaAUCGCg -3'
miRNA:   3'- -CGgaGCUGGA------------UG--UGGCUUCGgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 28931 0.67 0.667082
Target:  5'- aGCCagGGCCU-C-CCGcuGCCAUCGa -3'
miRNA:   3'- -CGGagCUGGAuGuGGCuuCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 11107 0.67 0.667082
Target:  5'- cGCCgCGACCUGggauuccaGCCG-GGCCAccaCGCg -3'
miRNA:   3'- -CGGaGCUGGAUg-------UGGCuUCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 41785 0.67 0.667082
Target:  5'- aGCCUUGggcACCgacucgACGCCGGAcGCCGUguccacggCGCu -3'
miRNA:   3'- -CGGAGC---UGGa-----UGUGGCUU-CGGUA--------GCG- -5'
26517 3' -54.2 NC_005357.1 + 15715 0.67 0.667082
Target:  5'- cGCCUgGGCaucgaacugGCG-CGAGGCCAUgCGCu -3'
miRNA:   3'- -CGGAgCUGga-------UGUgGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 21184 0.67 0.667082
Target:  5'- uGCUgcgCGGCCUGCuGCUGGucuGCgCGUUGCu -3'
miRNA:   3'- -CGGa--GCUGGAUG-UGGCUu--CG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 6585 0.67 0.660384
Target:  5'- cGCCUCGGCCaggggGCugCGGucuuugucgaugaccAGCgGgCGCg -3'
miRNA:   3'- -CGGAGCUGGa----UGugGCU---------------UCGgUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 40448 0.67 0.655912
Target:  5'- aCCUCGcgcGCCUACAgCGugccuucccccaGGGCCG-CGCg -3'
miRNA:   3'- cGGAGC---UGGAUGUgGC------------UUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18435 0.67 0.655912
Target:  5'- cGCCgaguCCUGCACCGAAaacguGaCgGUCGCg -3'
miRNA:   3'- -CGGagcuGGAUGUGGCUU-----C-GgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4364 0.67 0.655912
Target:  5'- gGCCggaCGGCaggcggaUGCGCagccaGgcGCCGUCGCg -3'
miRNA:   3'- -CGGa--GCUGg------AUGUGg----CuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 33662 0.67 0.655912
Target:  5'- cGCCgCGugCUGC-CCGAAGCgGcaCGUg -3'
miRNA:   3'- -CGGaGCugGAUGuGGCUUCGgUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 32553 0.67 0.655912
Target:  5'- cGCCU-GGCCgagaagcagcGCGCCGguGCCA-CGCu -3'
miRNA:   3'- -CGGAgCUGGa---------UGUGGCuuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18405 0.67 0.655912
Target:  5'- cGCgUCG-CCUuCGCUGAauuGGCCGaCGCg -3'
miRNA:   3'- -CGgAGCuGGAuGUGGCU---UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 11998 0.67 0.655912
Target:  5'- gGCCuuuuccacgUCGGCCaGCAgCGcGGCCGUgGCc -3'
miRNA:   3'- -CGG---------AGCUGGaUGUgGCuUCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 6635 0.67 0.64472
Target:  5'- aGCUUCGcGCgCUugGCCGGAGUguCcgCGCu -3'
miRNA:   3'- -CGGAGC-UG-GAugUGGCUUCG--GuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 28205 0.67 0.633515
Target:  5'- cGCCuuguccaggUCGGCC-ACGCCGAcGaCCAcgCGCg -3'
miRNA:   3'- -CGG---------AGCUGGaUGUGGCUuC-GGUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 8387 0.67 0.633515
Target:  5'- gGCCUCGcGCUgGCugCGuAGCCAgUCGg -3'
miRNA:   3'- -CGGAGC-UGGaUGugGCuUCGGU-AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.