miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 23721 0.67 0.633515
Target:  5'- cGCCguacCGAUgcgCUGCugcugACCGAGGCCcgCGUg -3'
miRNA:   3'- -CGGa---GCUG---GAUG-----UGGCUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 28205 0.67 0.633515
Target:  5'- cGCCuuguccaggUCGGCC-ACGCCGAcGaCCAcgCGCg -3'
miRNA:   3'- -CGG---------AGCUGGaUGUGGCUuC-GGUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 6798 0.68 0.622309
Target:  5'- cGCCUUGACUUGCgcaucGCUGggGUCgAUCa- -3'
miRNA:   3'- -CGGAGCUGGAUG-----UGGCuuCGG-UAGcg -5'
26517 3' -54.2 NC_005357.1 + 29270 0.68 0.622309
Target:  5'- gGCCgacacUGGCCgACAUCGAGGCgcaGUUGCa -3'
miRNA:   3'- -CGGa----GCUGGaUGUGGCUUCGg--UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 39690 0.68 0.622309
Target:  5'- cGCC-CGAgCaGCGCCG-GGCCG-CGCu -3'
miRNA:   3'- -CGGaGCUgGaUGUGGCuUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 30997 0.68 0.611112
Target:  5'- cGCCUuaucggCGACCUgcACGCCGGcucGCCGcUGCu -3'
miRNA:   3'- -CGGA------GCUGGA--UGUGGCUu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 29759 0.68 0.611112
Target:  5'- gGCCUCGG-CUGCugCcAGGCgCGUgCGCg -3'
miRNA:   3'- -CGGAGCUgGAUGugGcUUCG-GUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 31561 0.68 0.611112
Target:  5'- cGCaUCGcGCCg--ACCGAAGCCA-CGCa -3'
miRNA:   3'- -CGgAGC-UGGaugUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 38397 0.68 0.599934
Target:  5'- uGCgCUCGACCcgcgcggcaugACGCUGGuGGCCggCGCg -3'
miRNA:   3'- -CG-GAGCUGGa----------UGUGGCU-UCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 36401 0.68 0.599934
Target:  5'- -gUUCGACUUcaagguguucaACACCGGcgaAGUCGUCGCc -3'
miRNA:   3'- cgGAGCUGGA-----------UGUGGCU---UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 1029 0.68 0.599934
Target:  5'- -aCUCGGCC-AUGCUGAAcguGCCGUgGCg -3'
miRNA:   3'- cgGAGCUGGaUGUGGCUU---CGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 27445 0.68 0.588785
Target:  5'- gGCCgcaGGCCcugGCGCUGGuauGCCAgCGCg -3'
miRNA:   3'- -CGGag-CUGGa--UGUGGCUu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 33796 0.68 0.588785
Target:  5'- gGCCggCGACCUcgcCACCGcagcGGCCGagaagCGCa -3'
miRNA:   3'- -CGGa-GCUGGAu--GUGGCu---UCGGUa----GCG- -5'
26517 3' -54.2 NC_005357.1 + 30276 0.68 0.588785
Target:  5'- aCCcCGacGCCUACGCgGAAGCgCAgCGCg -3'
miRNA:   3'- cGGaGC--UGGAUGUGgCUUCG-GUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 11413 0.68 0.588785
Target:  5'- uGCCUCGGCCgGCAagcCCGuGGaCAggUCGCg -3'
miRNA:   3'- -CGGAGCUGGaUGU---GGCuUCgGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 4199 0.68 0.577673
Target:  5'- cGCCgaaaaguuggaaUCGGCgcGCACCGu-GCCAUCGUc -3'
miRNA:   3'- -CGG------------AGCUGgaUGUGGCuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 3850 0.68 0.577673
Target:  5'- aCCUCGGCgaagUUGUACCaGgcGCCGUCGCu -3'
miRNA:   3'- cGGAGCUG----GAUGUGG-CuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 32915 0.68 0.577673
Target:  5'- gGCCaCGGCCUGCACgGcugcuguucGGCCAggGCg -3'
miRNA:   3'- -CGGaGCUGGAUGUGgCu--------UCGGUagCG- -5'
26517 3' -54.2 NC_005357.1 + 38177 0.68 0.577673
Target:  5'- cGCUgaCGGCCgGCACCGAcuacGCCAUCu- -3'
miRNA:   3'- -CGGa-GCUGGaUGUGGCUu---CGGUAGcg -5'
26517 3' -54.2 NC_005357.1 + 15452 0.68 0.576564
Target:  5'- uUCUUGAcgcgcCCUugGCCGAAGCUgccguccaguugcAUCGCc -3'
miRNA:   3'- cGGAGCU-----GGAugUGGCUUCGG-------------UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.