miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 17974 0.69 0.566608
Target:  5'- gGUCgUCGGCgUcaauguCGCCGAGGCCG-CGCg -3'
miRNA:   3'- -CGG-AGCUGgAu-----GUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 8557 0.69 0.555598
Target:  5'- cGCgCUCGACCUcauccuggGCGUCGuAGGCCG-CGCg -3'
miRNA:   3'- -CG-GAGCUGGA--------UGUGGC-UUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 12570 0.69 0.555598
Target:  5'- gGCCUCG-CgCUGCGCggCGAugaaauAGCCGUCGa -3'
miRNA:   3'- -CGGAGCuG-GAUGUG--GCU------UCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 19059 0.69 0.555598
Target:  5'- gGCgUCGAucagcguguCCU-CGCCGAGGUCA-CGCg -3'
miRNA:   3'- -CGgAGCU---------GGAuGUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 2358 0.69 0.555598
Target:  5'- cGCCgcaauUCGGCCUGCACguggcaGAcGCCcgCGUg -3'
miRNA:   3'- -CGG-----AGCUGGAUGUGg-----CUuCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 14991 0.69 0.544651
Target:  5'- cGCCagGGCCUGCggccGCCGGGcgcggugcGCCAggcgCGCg -3'
miRNA:   3'- -CGGagCUGGAUG----UGGCUU--------CGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 26027 0.69 0.544651
Target:  5'- uCCUCGGCgaugGCAUCaAAGCCcgCGCg -3'
miRNA:   3'- cGGAGCUGga--UGUGGcUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 17584 0.69 0.544651
Target:  5'- aUCUCGucacCCUGCAaucguugcCCG-AGCCAUUGCg -3'
miRNA:   3'- cGGAGCu---GGAUGU--------GGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18384 0.69 0.544651
Target:  5'- gGCCUUG-CCgaugGCGCCGGuggcGGCCAcgUCGg -3'
miRNA:   3'- -CGGAGCuGGa---UGUGGCU----UCGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 41793 0.69 0.533775
Target:  5'- cGCCU-GACCcguucacccGCGCCGAGGCUgaggccaucAUCGCc -3'
miRNA:   3'- -CGGAgCUGGa--------UGUGGCUUCGG---------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11562 0.69 0.533775
Target:  5'- uGCC-CG-CCgguCAUCGAAGCCAUgcCGCc -3'
miRNA:   3'- -CGGaGCuGGau-GUGGCUUCGGUA--GCG- -5'
26517 3' -54.2 NC_005357.1 + 25524 0.69 0.522977
Target:  5'- cGCCaaucCCUACGCCGAAGCCGa--- -3'
miRNA:   3'- -CGGagcuGGAUGUGGCUUCGGUagcg -5'
26517 3' -54.2 NC_005357.1 + 10710 0.69 0.522977
Target:  5'- gGCCUCGGCCgAUugCuuGAAugcGUCGUCGCc -3'
miRNA:   3'- -CGGAGCUGGaUGugG--CUU---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 30445 0.69 0.521902
Target:  5'- gGCCUCGcccugaaucaguuGCCaggggGCGCCG--GUCAUCGCg -3'
miRNA:   3'- -CGGAGC-------------UGGa----UGUGGCuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 29032 0.69 0.520827
Target:  5'- cGCUUCGGCCaggucgauaccCACCGGcggcucguaGGCCAUCaGCg -3'
miRNA:   3'- -CGGAGCUGGau---------GUGGCU---------UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 8463 0.69 0.512264
Target:  5'- cGUCgaggUGGCCUGCgauGCCGcAGCCGaCGCg -3'
miRNA:   3'- -CGGa---GCUGGAUG---UGGCuUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 3777 0.69 0.512264
Target:  5'- aGCCUCGGUCgu-GCCGAAaGCCAgCGCc -3'
miRNA:   3'- -CGGAGCUGGaugUGGCUU-CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 23555 0.69 0.512264
Target:  5'- gGCCUCGGCCgACAUCGccGGCaggUGCg -3'
miRNA:   3'- -CGGAGCUGGaUGUGGCu-UCGguaGCG- -5'
26517 3' -54.2 NC_005357.1 + 37132 0.69 0.511198
Target:  5'- gGCCUCGACCUGCcagacaugcagcaAUCGAcGCUGgaacgaCGCa -3'
miRNA:   3'- -CGGAGCUGGAUG-------------UGGCUuCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 17444 0.7 0.501643
Target:  5'- gGCCcCG-CCaGCAUCGAGGCCAggUGCc -3'
miRNA:   3'- -CGGaGCuGGaUGUGGCUUCGGUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.