miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 376 0.67 0.678218
Target:  5'- -gCUUGGCCU--GCCGAuugagcgcGGCCAgcgCGCg -3'
miRNA:   3'- cgGAGCUGGAugUGGCU--------UCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 476 0.71 0.431304
Target:  5'- cGCUUCGACaaucgccaguuucGCGCUGAacaaguccacguugGGCCAUCGCu -3'
miRNA:   3'- -CGGAGCUGga-----------UGUGGCU--------------UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 491 0.72 0.383188
Target:  5'- uGCCUCGGCagcauaCUGCGCCGcGGCgGcUUGCa -3'
miRNA:   3'- -CGGAGCUG------GAUGUGGCuUCGgU-AGCG- -5'
26517 3' -54.2 NC_005357.1 + 1029 0.68 0.599934
Target:  5'- -aCUCGGCC-AUGCUGAAcguGCCGUgGCg -3'
miRNA:   3'- cgGAGCUGGaUGUGGCUU---CGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 1348 0.67 0.667082
Target:  5'- aGCCguggucggCGGCCUugcgcauccgGCgACCGAAGCgCAaguccUCGCg -3'
miRNA:   3'- -CGGa-------GCUGGA----------UG-UGGCUUCG-GU-----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 1763 0.66 0.722191
Target:  5'- gGCC--GGCCUGCGCCu-GGCgCGUCGg -3'
miRNA:   3'- -CGGagCUGGAUGUGGcuUCG-GUAGCg -5'
26517 3' -54.2 NC_005357.1 + 2358 0.69 0.555598
Target:  5'- cGCCgcaauUCGGCCUGCACguggcaGAcGCCcgCGUg -3'
miRNA:   3'- -CGG-----AGCUGGAUGUGg-----CUuCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 2431 0.67 0.633515
Target:  5'- aCCUCGAUUUgaagGCGCCGAaacugcGGCCcaggCGCu -3'
miRNA:   3'- cGGAGCUGGA----UGUGGCU------UCGGua--GCG- -5'
26517 3' -54.2 NC_005357.1 + 3777 0.69 0.512264
Target:  5'- aGCCUCGGUCgu-GCCGAAaGCCAgCGCc -3'
miRNA:   3'- -CGGAGCUGGaugUGGCUU-CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 3850 0.68 0.577673
Target:  5'- aCCUCGGCgaagUUGUACCaGgcGCCGUCGCu -3'
miRNA:   3'- cGGAGCUG----GAUGUGG-CuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4185 0.72 0.374181
Target:  5'- cGCCUCGAuggcgggcaUgUugGCCGcGAGCaCGUCGCg -3'
miRNA:   3'- -CGGAGCU---------GgAugUGGC-UUCG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4199 0.68 0.577673
Target:  5'- cGCCgaaaaguuggaaUCGGCgcGCACCGu-GCCAUCGUc -3'
miRNA:   3'- -CGG------------AGCUGgaUGUGGCuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4364 0.67 0.655912
Target:  5'- gGCCggaCGGCaggcggaUGCGCagccaGgcGCCGUCGCg -3'
miRNA:   3'- -CGGa--GCUGg------AUGUGg----CuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4638 0.7 0.470389
Target:  5'- -gCUgGGCC-ACGCUGcgucGGCCAUCGCg -3'
miRNA:   3'- cgGAgCUGGaUGUGGCu---UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 4864 0.66 0.732982
Target:  5'- aGCUUCcaauCCU-CGCCGGcgAGCCA-CGCa -3'
miRNA:   3'- -CGGAGcu--GGAuGUGGCU--UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 5703 0.66 0.743669
Target:  5'- uCCUUGGCCUugucggucgGCACCuuGAGGauGUCGCa -3'
miRNA:   3'- cGGAGCUGGA---------UGUGG--CUUCggUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 5771 0.73 0.313661
Target:  5'- cGCCagGGCCUugACCaucgugucccGCCAUCGCg -3'
miRNA:   3'- -CGGagCUGGAugUGGcuu-------CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 6283 0.7 0.501643
Target:  5'- cGCUUUGGCUgggGCGCCGggGCUuaucuccggUGCg -3'
miRNA:   3'- -CGGAGCUGGa--UGUGGCuuCGGua-------GCG- -5'
26517 3' -54.2 NC_005357.1 + 6585 0.67 0.660384
Target:  5'- cGCCUCGGCCaggggGCugCGGucuuugucgaugaccAGCgGgCGCg -3'
miRNA:   3'- -CGGAGCUGGa----UGugGCU---------------UCGgUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 6635 0.67 0.64472
Target:  5'- aGCUUCGcGCgCUugGCCGGAGUguCcgCGCu -3'
miRNA:   3'- -CGGAGC-UG-GAugUGGCUUCG--GuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.