miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 6798 0.68 0.622309
Target:  5'- cGCCUUGACUUGCgcaucGCUGggGUCgAUCa- -3'
miRNA:   3'- -CGGAGCUGGAUG-----UGGCuuCGG-UAGcg -5'
26517 3' -54.2 NC_005357.1 + 7449 0.72 0.356601
Target:  5'- gGCUUCGGCCUuCGCgCGAauGGCC-UUGCa -3'
miRNA:   3'- -CGGAGCUGGAuGUG-GCU--UCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 7641 0.72 0.392339
Target:  5'- cGgCUCGACCcACGCCGGcuccuuGCCGUacaCGCg -3'
miRNA:   3'- -CgGAGCUGGaUGUGGCUu-----CGGUA---GCG- -5'
26517 3' -54.2 NC_005357.1 + 7641 0.66 0.715671
Target:  5'- gGCCUUGGCCUugcagaaucgacauuGCuucucACCGggGgCCAggUCGUc -3'
miRNA:   3'- -CGGAGCUGGA---------------UG-----UGGCuuC-GGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 7708 0.71 0.405386
Target:  5'- cCCUCGaagugaucccacaccGCCUGCACCGcuuGCCAUuccugCGCa -3'
miRNA:   3'- cGGAGC---------------UGGAUGUGGCuu-CGGUA-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 7771 0.71 0.450112
Target:  5'- aCCggcgCGAUCUGCGCCGgcGuCCAcccuUCGCc -3'
miRNA:   3'- cGGa---GCUGGAUGUGGCuuC-GGU----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 7968 0.67 0.678218
Target:  5'- gGCCUCGGCgcGCAUCGGGuuuccaugucGCCG-CGCu -3'
miRNA:   3'- -CGGAGCUGgaUGUGGCUU----------CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 8213 0.66 0.722191
Target:  5'- gGCCUCGuagucGCGCUGGucggcGGCCGUCaGCa -3'
miRNA:   3'- -CGGAGCugga-UGUGGCU-----UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 8387 0.67 0.633515
Target:  5'- gGCCUCGcGCUgGCugCGuAGCCAgUCGg -3'
miRNA:   3'- -CGGAGC-UGGaUGugGCuUCGGU-AGCg -5'
26517 3' -54.2 NC_005357.1 + 8463 0.69 0.512264
Target:  5'- cGUCgaggUGGCCUGCgauGCCGcAGCCGaCGCg -3'
miRNA:   3'- -CGGa---GCUGGAUG---UGGCuUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 8557 0.69 0.555598
Target:  5'- cGCgCUCGACCUcauccuggGCGUCGuAGGCCG-CGCg -3'
miRNA:   3'- -CG-GAGCUGGA--------UGUGGC-UUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 8625 0.66 0.721107
Target:  5'- uUCUCGGCC-GCugCGGuggcgaggucgccGGCCuucAUCGCg -3'
miRNA:   3'- cGGAGCUGGaUGugGCU-------------UCGG---UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 9587 0.71 0.411061
Target:  5'- cGUCUgCGGCCa--GgCGAAGCCGUUGCg -3'
miRNA:   3'- -CGGA-GCUGGaugUgGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 10324 0.7 0.460191
Target:  5'- aGUUUCG-CC-AgGCCGuAGCCGUCGCu -3'
miRNA:   3'- -CGGAGCuGGaUgUGGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 10710 0.69 0.522977
Target:  5'- gGCCUCGGCCgAUugCuuGAAugcGUCGUCGCc -3'
miRNA:   3'- -CGGAGCUGGaUGugG--CUU---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11018 0.66 0.721107
Target:  5'- gGCgUCGAUgaacaccugCUGCACCG-GGCCGUucucggcCGCa -3'
miRNA:   3'- -CGgAGCUG---------GAUGUGGCuUCGGUA-------GCG- -5'
26517 3' -54.2 NC_005357.1 + 11107 0.67 0.667082
Target:  5'- cGCCgCGACCUGggauuccaGCCG-GGCCAccaCGCg -3'
miRNA:   3'- -CGGaGCUGGAUg-------UGGCuUCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 11139 0.7 0.460191
Target:  5'- aGCaguUCGGCCUGCugCuGGGCCGccugCGCa -3'
miRNA:   3'- -CGg--AGCUGGAUGugGcUUCGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 11337 0.73 0.348031
Target:  5'- cGCC--GGCCUGCACCGAGGUgAgcaGCg -3'
miRNA:   3'- -CGGagCUGGAUGUGGCUUCGgUag-CG- -5'
26517 3' -54.2 NC_005357.1 + 11413 0.68 0.588785
Target:  5'- uGCCUCGGCCgGCAagcCCGuGGaCAggUCGCg -3'
miRNA:   3'- -CGGAGCUGGaUGU---GGCuUCgGU--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.