miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 11562 0.69 0.533775
Target:  5'- uGCC-CG-CCgguCAUCGAAGCCAUgcCGCc -3'
miRNA:   3'- -CGGaGCuGGau-GUGGCUUCGGUA--GCG- -5'
26517 3' -54.2 NC_005357.1 + 11998 0.67 0.655912
Target:  5'- gGCCuuuuccacgUCGGCCaGCAgCGcGGCCGUgGCc -3'
miRNA:   3'- -CGG---------AGCUGGaUGUgGCuUCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 12446 0.73 0.331336
Target:  5'- gGCCcguUCGACggCUGCAUCcAGGCCGUCGUg -3'
miRNA:   3'- -CGG---AGCUG--GAUGUGGcUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 12570 0.69 0.555598
Target:  5'- gGCCUCG-CgCUGCGCggCGAugaaauAGCCGUCGa -3'
miRNA:   3'- -CGGAGCuG-GAUGUG--GCU------UCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 13233 0.71 0.40163
Target:  5'- cGUC-CGACCUGCcggucaucACCGAGGCCcaaGUCGa -3'
miRNA:   3'- -CGGaGCUGGAUG--------UGGCUUCGG---UAGCg -5'
26517 3' -54.2 NC_005357.1 + 13392 0.71 0.450112
Target:  5'- cGCCgguggguaUCGACCUG-GCCGAAGCgCggCGCc -3'
miRNA:   3'- -CGG--------AGCUGGAUgUGGCUUCG-GuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 13996 0.73 0.351441
Target:  5'- gGCCUCGugCUGCACagcuugaccacggaaCGAGGUCAggaugUCGUu -3'
miRNA:   3'- -CGGAGCugGAUGUG---------------GCUUCGGU-----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 14328 0.66 0.732982
Target:  5'- cGCCUUGGCUgaACugCcGGGCCugcugguUCGCg -3'
miRNA:   3'- -CGGAGCUGGa-UGugGcUUCGGu------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 14616 0.66 0.722191
Target:  5'- uGCgUCGGCUuccaUGCuuCCGgcGCCGgugCGCa -3'
miRNA:   3'- -CGgAGCUGG----AUGu-GGCuuCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 14912 0.66 0.689308
Target:  5'- aCCcCGACC-GCGCCGAgaagcuggcGGCCGagGCc -3'
miRNA:   3'- cGGaGCUGGaUGUGGCU---------UCGGUagCG- -5'
26517 3' -54.2 NC_005357.1 + 14991 0.69 0.544651
Target:  5'- cGCCagGGCCUGCggccGCCGGGcgcggugcGCCAggcgCGCg -3'
miRNA:   3'- -CGGagCUGGAUG----UGGCUU--------CGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 15452 0.68 0.576564
Target:  5'- uUCUUGAcgcgcCCUugGCCGAAGCUgccguccaguugcAUCGCc -3'
miRNA:   3'- cGGAGCU-----GGAugUGGCUUCGG-------------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 15715 0.67 0.667082
Target:  5'- cGCCUgGGCaucgaacugGCG-CGAGGCCAUgCGCu -3'
miRNA:   3'- -CGGAgCUGga-------UGUgGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 16179 0.66 0.743669
Target:  5'- cGCgUCGGaguuCACCGAcGCCA-CGCg -3'
miRNA:   3'- -CGgAGCUggauGUGGCUuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 16231 1.13 0.00051
Target:  5'- cGCCUCGACCUACACCGAAGCCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGAUGUGGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 16640 0.66 0.732982
Target:  5'- aCCgagCGcGCCgcgcGCAUCGcGGCCAUCGUu -3'
miRNA:   3'- cGGa--GC-UGGa---UGUGGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 17368 0.67 0.667082
Target:  5'- cGCCUgCGacagguauGCCUGCAUCGc-GCCGaCGCa -3'
miRNA:   3'- -CGGA-GC--------UGGAUGUGGCuuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 17444 0.7 0.501643
Target:  5'- gGCCcCG-CCaGCAUCGAGGCCAggUGCc -3'
miRNA:   3'- -CGGaGCuGGaUGUGGCUUCGGUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 17584 0.69 0.544651
Target:  5'- aUCUCGucacCCUGCAaucguugcCCG-AGCCAUUGCg -3'
miRNA:   3'- cGGAGCu---GGAUGU--------GGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 17722 0.72 0.374181
Target:  5'- gGCC-CGACCgacugGCACCGAuggacAGCCugggCGUg -3'
miRNA:   3'- -CGGaGCUGGa----UGUGGCU-----UCGGua--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.