miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 17859 0.73 0.307413
Target:  5'- gGCC-CGACCgugGCCGGccucGCCAUCGCc -3'
miRNA:   3'- -CGGaGCUGGaugUGGCUu---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 17860 0.66 0.743669
Target:  5'- gGCCUCGucGCCcaggUAgGCCaGGGCCAgaUUGCa -3'
miRNA:   3'- -CGGAGC--UGG----AUgUGGcUUCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 17974 0.69 0.566608
Target:  5'- gGUCgUCGGCgUcaauguCGCCGAGGCCG-CGCg -3'
miRNA:   3'- -CGG-AGCUGgAu-----GUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18057 0.73 0.31841
Target:  5'- gGCCUuaccggcgcggggugCGugCUGggcCGCCGAAGCCggCGCg -3'
miRNA:   3'- -CGGA---------------GCugGAU---GUGGCUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18238 0.71 0.428376
Target:  5'- cGCCUaCGugCUcgcgcucauggacACGCCGAagcgcgcAGCCGUCGa -3'
miRNA:   3'- -CGGA-GCugGA-------------UGUGGCU-------UCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 18254 0.83 0.07048
Target:  5'- uGCCggucaCGACCUGCGCCGAgaacuugccGGCCGUCaGCg -3'
miRNA:   3'- -CGGa----GCUGGAUGUGGCU---------UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 18384 0.69 0.544651
Target:  5'- gGCCUUG-CCgaugGCGCCGGuggcGGCCAcgUCGg -3'
miRNA:   3'- -CGGAGCuGGa---UGUGGCU----UCGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 18405 0.67 0.655912
Target:  5'- cGCgUCG-CCUuCGCUGAauuGGCCGaCGCg -3'
miRNA:   3'- -CGgAGCuGGAuGUGGCU---UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 18435 0.67 0.655912
Target:  5'- cGCCgaguCCUGCACCGAAaacguGaCgGUCGCg -3'
miRNA:   3'- -CGGagcuGGAUGUGGCUU-----C-GgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18515 0.66 0.689308
Target:  5'- cGCCUauGCCgGCAUgGAAGCCGcgggCGUg -3'
miRNA:   3'- -CGGAgcUGGaUGUGgCUUCGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 18866 0.79 0.144894
Target:  5'- cGCC-CGcACCUGCcggcgaugucgGCCGAGGCCAUCGa -3'
miRNA:   3'- -CGGaGC-UGGAUG-----------UGGCUUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 19059 0.69 0.555598
Target:  5'- gGCgUCGAucagcguguCCU-CGCCGAGGUCA-CGCg -3'
miRNA:   3'- -CGgAGCU---------GGAuGUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 19071 0.66 0.743669
Target:  5'- cGCCacCGugUUcaucgGCGgCGAGGCCGUCGa -3'
miRNA:   3'- -CGGa-GCugGA-----UGUgGCUUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 19140 0.66 0.731908
Target:  5'- -gUUCGGCCcccACACCGucAGCCAgauggaugcguugUCGCu -3'
miRNA:   3'- cgGAGCUGGa--UGUGGCu-UCGGU-------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 19218 0.66 0.732982
Target:  5'- gGCCgaGGCCgaauuCACCGAcgaGGCCgaccugcugcuGUCGCa -3'
miRNA:   3'- -CGGagCUGGau---GUGGCU---UCGG-----------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 20471 0.71 0.450112
Target:  5'- cCUUCGGCgaAgGCCauAGCCAUCGCg -3'
miRNA:   3'- cGGAGCUGgaUgUGGcuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 20738 0.71 0.411061
Target:  5'- aCCUCGACCUgucGCACCuucuGGCUgacAUCGUg -3'
miRNA:   3'- cGGAGCUGGA---UGUGGcu--UCGG---UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 21184 0.67 0.667082
Target:  5'- uGCUgcgCGGCCUGCuGCUGGucuGCgCGUUGCu -3'
miRNA:   3'- -CGGa--GCUGGAUG-UGGCUu--CG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 21477 0.74 0.270521
Target:  5'- gGCCUCGACCaUGCGCUGAAacGUCAauUCGa -3'
miRNA:   3'- -CGGAGCUGG-AUGUGGCUU--CGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 23225 0.79 0.140869
Target:  5'- gGCCUCGGCCUcggcCACCGAccgcGCC-UCGCu -3'
miRNA:   3'- -CGGAGCUGGAu---GUGGCUu---CGGuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.