miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 42079 0.7 0.501643
Target:  5'- gGCCUggcggaCGGCCUGCugCGcgacGCCAcCGCc -3'
miRNA:   3'- -CGGA------GCUGGAUGugGCuu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 41793 0.69 0.533775
Target:  5'- cGCCU-GACCcguucacccGCGCCGAGGCUgaggccaucAUCGCc -3'
miRNA:   3'- -CGGAgCUGGa--------UGUGGCUUCGG---------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 41785 0.67 0.667082
Target:  5'- aGCCUUGggcACCgacucgACGCCGGAcGCCGUguccacggCGCu -3'
miRNA:   3'- -CGGAGC---UGGa-----UGUGGCUU-CGGUA--------GCG- -5'
26517 3' -54.2 NC_005357.1 + 40448 0.67 0.655912
Target:  5'- aCCUCGcgcGCCUACAgCGugccuucccccaGGGCCG-CGCg -3'
miRNA:   3'- cGGAGC---UGGAUGUgGC------------UUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 39690 0.68 0.622309
Target:  5'- cGCC-CGAgCaGCGCCG-GGCCG-CGCu -3'
miRNA:   3'- -CGGaGCUgGaUGUGGCuUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 38399 0.73 0.339609
Target:  5'- cGCCgCGGCCgGCuuUGAAGCCuAUCGCu -3'
miRNA:   3'- -CGGaGCUGGaUGugGCUUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 38397 0.68 0.599934
Target:  5'- uGCgCUCGACCcgcgcggcaugACGCUGGuGGCCggCGCg -3'
miRNA:   3'- -CG-GAGCUGGa----------UGUGGCU-UCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 38177 0.68 0.577673
Target:  5'- cGCUgaCGGCCgGCACCGAcuacGCCAUCu- -3'
miRNA:   3'- -CGGa-GCUGGaUGUGGCUu---CGGUAGcg -5'
26517 3' -54.2 NC_005357.1 + 38008 0.66 0.689308
Target:  5'- gGCCggguaCGACCUACgacuGCCGcacgcucaAGGCCcggCGCg -3'
miRNA:   3'- -CGGa----GCUGGAUG----UGGC--------UUCGGua-GCG- -5'
26517 3' -54.2 NC_005357.1 + 37850 0.66 0.743669
Target:  5'- uCCUCG-CCUggcGCACCG-AGCag-CGCc -3'
miRNA:   3'- cGGAGCuGGA---UGUGGCuUCGguaGCG- -5'
26517 3' -54.2 NC_005357.1 + 37774 0.72 0.356601
Target:  5'- gGCaUCGACCUugACgCGAuGGCCGaCGCa -3'
miRNA:   3'- -CGgAGCUGGAugUG-GCU-UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 37628 0.76 0.213203
Target:  5'- aCCUCuacaagcuGGCCUACGCCaAAGCCuUCGCg -3'
miRNA:   3'- cGGAG--------CUGGAUGUGGcUUCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 37132 0.69 0.511198
Target:  5'- gGCCUCGACCUGCcagacaugcagcaAUCGAcGCUGgaacgaCGCa -3'
miRNA:   3'- -CGGAGCUGGAUG-------------UGGCUuCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 37120 0.7 0.460191
Target:  5'- gGCCggCGACCUggaaaAUAUCGAcGCCGUgGCc -3'
miRNA:   3'- -CGGa-GCUGGA-----UGUGGCUuCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 36865 0.76 0.213203
Target:  5'- uGCC--GGCCUcgACAUCGAAGCCAUgCGCg -3'
miRNA:   3'- -CGGagCUGGA--UGUGGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 36808 0.71 0.411061
Target:  5'- aCCUCG-CCaACAUCGAcGCCGUgGCu -3'
miRNA:   3'- cGGAGCuGGaUGUGGCUuCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 36401 0.68 0.599934
Target:  5'- -gUUCGACUUcaagguguucaACACCGGcgaAGUCGUCGCc -3'
miRNA:   3'- cgGAGCUGGA-----------UGUGGCU---UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 36045 0.74 0.284834
Target:  5'- gGCCggcCGGCCUGCGCCuGAuugccgacgugGGCCGguUCGCc -3'
miRNA:   3'- -CGGa--GCUGGAUGUGG-CU-----------UCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 35361 0.73 0.306639
Target:  5'- aGCCUguucaaaCGACgCUGCcgcCCGAGGCCAUgCGCc -3'
miRNA:   3'- -CGGA-------GCUG-GAUGu--GGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 34618 0.71 0.420627
Target:  5'- cGCCUCGACCauauCAgCGAGugggacauGCcCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGau--GUgGCUU--------CG-GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.