miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 34556 0.66 0.732982
Target:  5'- uCC-CGACC-AUcgGCCGAAGCCugaacCGCg -3'
miRNA:   3'- cGGaGCUGGaUG--UGGCUUCGGua---GCG- -5'
26517 3' -54.2 NC_005357.1 + 34212 0.73 0.331336
Target:  5'- gGCCgcCGACCaGCGCgacuaCGAGGCCGUgCGCg -3'
miRNA:   3'- -CGGa-GCUGGaUGUG-----GCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 33956 0.71 0.427403
Target:  5'- cGCgUCGGCUgcgGCAUCGcAGGCCAccucgacgccgacaUCGCg -3'
miRNA:   3'- -CGgAGCUGGa--UGUGGC-UUCGGU--------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 33796 0.68 0.588785
Target:  5'- gGCCggCGACCUcgcCACCGcagcGGCCGagaagCGCa -3'
miRNA:   3'- -CGGa-GCUGGAu--GUGGCu---UCGGUa----GCG- -5'
26517 3' -54.2 NC_005357.1 + 33662 0.67 0.655912
Target:  5'- cGCCgCGugCUGC-CCGAAGCgGcaCGUg -3'
miRNA:   3'- -CGGaGCugGAUGuGGCUUCGgUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 33569 0.71 0.430327
Target:  5'- cGCUUCGug--GCgACCGAGGCCAaCGCg -3'
miRNA:   3'- -CGGAGCuggaUG-UGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 33191 0.74 0.277604
Target:  5'- cCCUCGGCaCggcCACCGcuGGCUAUCGCg -3'
miRNA:   3'- cGGAGCUG-Gau-GUGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 33110 0.66 0.729755
Target:  5'- cGCCgcgcCGACgUGCGCCGccaggucgccgaggAAGUCAaugCGCa -3'
miRNA:   3'- -CGGa---GCUGgAUGUGGC--------------UUCGGUa--GCG- -5'
26517 3' -54.2 NC_005357.1 + 32915 0.68 0.577673
Target:  5'- gGCCaCGGCCUGCACgGcugcuguucGGCCAggGCg -3'
miRNA:   3'- -CGGaGCUGGAUGUGgCu--------UCGGUagCG- -5'
26517 3' -54.2 NC_005357.1 + 32553 0.67 0.655912
Target:  5'- cGCCU-GGCCgagaagcagcGCGCCGguGCCA-CGCu -3'
miRNA:   3'- -CGGAgCUGGa---------UGUGGCuuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 31659 0.66 0.732982
Target:  5'- cGCUuggUgGGCCUACACCG--GCCAcaaGCa -3'
miRNA:   3'- -CGG---AgCUGGAUGUGGCuuCGGUag-CG- -5'
26517 3' -54.2 NC_005357.1 + 31561 0.68 0.611112
Target:  5'- cGCaUCGcGCCg--ACCGAAGCCA-CGCa -3'
miRNA:   3'- -CGgAGC-UGGaugUGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 31506 0.66 0.711307
Target:  5'- uGCCgcCGGCgUGCugCuGGGCC-UCGCu -3'
miRNA:   3'- -CGGa-GCUGgAUGugGcUUCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 31438 0.71 0.450112
Target:  5'- cGCCaCGAUCUGCGgCGuGGUCAUCGg -3'
miRNA:   3'- -CGGaGCUGGAUGUgGCuUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 31005 0.67 0.667082
Target:  5'- cGCg-CGACCUguccacgggcuuGCcgGCCGAGGCaAUCGCg -3'
miRNA:   3'- -CGgaGCUGGA------------UG--UGGCUUCGgUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 30997 0.68 0.611112
Target:  5'- cGCCUuaucggCGACCUgcACGCCGGcucGCCGcUGCu -3'
miRNA:   3'- -CGGA------GCUGGA--UGUGGCUu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 30445 0.69 0.521902
Target:  5'- gGCCUCGcccugaaucaguuGCCaggggGCGCCG--GUCAUCGCg -3'
miRNA:   3'- -CGGAGC-------------UGGa----UGUGGCuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 30399 0.66 0.743669
Target:  5'- cGCUgggcaaGACCU-CGCCGGccacGGCCG-CGCu -3'
miRNA:   3'- -CGGag----CUGGAuGUGGCU----UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 30276 0.68 0.588785
Target:  5'- aCCcCGacGCCUACGCgGAAGCgCAgCGCg -3'
miRNA:   3'- cGGaGC--UGGAUGUGgCUUCG-GUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 30138 0.71 0.420627
Target:  5'- cGCCgcCGGCCUGCACCGcgucGGaCAUCaGCg -3'
miRNA:   3'- -CGGa-GCUGGAUGUGGCu---UCgGUAG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.