miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 29759 0.68 0.611112
Target:  5'- gGCCUCGG-CUGCugCcAGGCgCGUgCGCg -3'
miRNA:   3'- -CGGAGCUgGAUGugGcUUCG-GUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 29351 0.66 0.700342
Target:  5'- uCCUCGaACCacGCGCCGGuGGCC-UUGCc -3'
miRNA:   3'- cGGAGC-UGGa-UGUGGCU-UCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 29270 0.68 0.622309
Target:  5'- gGCCgacacUGGCCgACAUCGAGGCgcaGUUGCa -3'
miRNA:   3'- -CGGa----GCUGGaUGUGGCUUCGg--UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 29084 0.66 0.732982
Target:  5'- uCCUCGG---GCGCCGAGGUCAggcccgUGCg -3'
miRNA:   3'- cGGAGCUggaUGUGGCUUCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 29032 0.69 0.520827
Target:  5'- cGCUUCGGCCaggucgauaccCACCGGcggcucguaGGCCAUCaGCg -3'
miRNA:   3'- -CGGAGCUGGau---------GUGGCU---------UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 28931 0.67 0.667082
Target:  5'- aGCCagGGCCU-C-CCGcuGCCAUCGa -3'
miRNA:   3'- -CGGagCUGGAuGuGGCuuCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 28826 0.66 0.741541
Target:  5'- cGCCgucgucggguugCGGCCggACuuGCCGAAGCUGUCccaGCg -3'
miRNA:   3'- -CGGa-----------GCUGGa-UG--UGGCUUCGGUAG---CG- -5'
26517 3' -54.2 NC_005357.1 + 28545 0.72 0.383188
Target:  5'- gGCa-CGACCuUGCgGCCGccGGCCAUCGCg -3'
miRNA:   3'- -CGgaGCUGG-AUG-UGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 28444 0.72 0.356601
Target:  5'- aGCCgUCGAUUUccgGCACguacaUGAGGCCGUCGCc -3'
miRNA:   3'- -CGG-AGCUGGA---UGUG-----GCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 28205 0.67 0.633515
Target:  5'- cGCCuuguccaggUCGGCC-ACGCCGAcGaCCAcgCGCg -3'
miRNA:   3'- -CGG---------AGCUGGaUGUGGCUuC-GGUa-GCG- -5'
26517 3' -54.2 NC_005357.1 + 28156 0.67 0.678218
Target:  5'- uGCCgguggucagaUCGACC-ACGCCGuuGCCcaCGCc -3'
miRNA:   3'- -CGG----------AGCUGGaUGUGGCuuCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 27597 0.66 0.722191
Target:  5'- cGCCaacggcaUCGACCUGggcgaaggcagcgcCGCCGAGGUgcagguuuccagcgaCAUCGUg -3'
miRNA:   3'- -CGG-------AGCUGGAU--------------GUGGCUUCG---------------GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 27507 0.66 0.689308
Target:  5'- gGCCUCGGCCgccaGCuucUCGgcGCgGUCGg -3'
miRNA:   3'- -CGGAGCUGGa---UGu--GGCuuCGgUAGCg -5'
26517 3' -54.2 NC_005357.1 + 27445 0.68 0.588785
Target:  5'- gGCCgcaGGCCcugGCGCUGGuauGCCAgCGCg -3'
miRNA:   3'- -CGGag-CUGGa--UGUGGCUu--CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 27118 0.7 0.4807
Target:  5'- uGCCUUaGCCUGCaaaGCUGAcGCCG-CGCg -3'
miRNA:   3'- -CGGAGcUGGAUG---UGGCUuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 26879 0.66 0.711307
Target:  5'- cGCCaUUGACCUGgACgugGAGGCCGgcaccgUGCa -3'
miRNA:   3'- -CGG-AGCUGGAUgUGg--CUUCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 26547 0.66 0.732982
Target:  5'- gGCCUC-ACCUACGugcCCGAgcaacagaucGGCgCGUgGCa -3'
miRNA:   3'- -CGGAGcUGGAUGU---GGCU----------UCG-GUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 26486 0.66 0.689308
Target:  5'- gGCCUacgCGAag-GCGCCGcAGCCuAUCGUg -3'
miRNA:   3'- -CGGA---GCUggaUGUGGCuUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 26299 0.66 0.726519
Target:  5'- gGCCgcaGuCCUACGUCGggGCCAccgacgugcagccggUCGUg -3'
miRNA:   3'- -CGGag-CuGGAUGUGGCuuCGGU---------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 26156 0.71 0.440156
Target:  5'- aGCCUuccgggUGGCC-GCGCgCGAGGCCAaCGCc -3'
miRNA:   3'- -CGGA------GCUGGaUGUG-GCUUCGGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.