miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 7771 0.71 0.450112
Target:  5'- aCCggcgCGAUCUGCGCCGgcGuCCAcccuUCGCc -3'
miRNA:   3'- cGGa---GCUGGAUGUGGCuuC-GGU----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 37774 0.72 0.356601
Target:  5'- gGCaUCGACCUugACgCGAuGGCCGaCGCa -3'
miRNA:   3'- -CGgAGCUGGAugUG-GCU-UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 491 0.72 0.383188
Target:  5'- uGCCUCGGCagcauaCUGCGCCGcGGCgGcUUGCa -3'
miRNA:   3'- -CGGAGCUG------GAUGUGGCuUCGgU-AGCG- -5'
26517 3' -54.2 NC_005357.1 + 28545 0.72 0.383188
Target:  5'- gGCa-CGACCuUGCgGCCGccGGCCAUCGCg -3'
miRNA:   3'- -CGgaGCUGG-AUG-UGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 7641 0.72 0.392339
Target:  5'- cGgCUCGACCcACGCCGGcuccuuGCCGUacaCGCg -3'
miRNA:   3'- -CgGAGCUGGaUGUGGCUu-----CGGUA---GCG- -5'
26517 3' -54.2 NC_005357.1 + 7708 0.71 0.405386
Target:  5'- cCCUCGaagugaucccacaccGCCUGCACCGcuuGCCAUuccugCGCa -3'
miRNA:   3'- cGGAGC---------------UGGAUGUGGCuu-CGGUA-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 30138 0.71 0.420627
Target:  5'- cGCCgcCGGCCUGCACCGcgucGGaCAUCaGCg -3'
miRNA:   3'- -CGGa-GCUGGAUGUGGCu---UCgGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 34618 0.71 0.420627
Target:  5'- cGCCUCGACCauauCAgCGAGugggacauGCcCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGau--GUgGCUU--------CG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 33956 0.71 0.427403
Target:  5'- cGCgUCGGCUgcgGCAUCGcAGGCCAccucgacgccgacaUCGCg -3'
miRNA:   3'- -CGgAGCUGGa--UGUGGC-UUCGGU--------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 28444 0.72 0.356601
Target:  5'- aGCCgUCGAUUUccgGCACguacaUGAGGCCGUCGCc -3'
miRNA:   3'- -CGG-AGCUGGA---UGUG-----GCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 13996 0.73 0.351441
Target:  5'- gGCCUCGugCUGCACagcuugaccacggaaCGAGGUCAggaugUCGUu -3'
miRNA:   3'- -CGGAGCugGAUGUG---------------GCUUCGGU-----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 38399 0.73 0.339609
Target:  5'- cGCCgCGGCCgGCuuUGAAGCCuAUCGCu -3'
miRNA:   3'- -CGGaGCUGGaUGugGCUUCGG-UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 23225 0.79 0.140869
Target:  5'- gGCCUCGGCCUcggcCACCGAccgcGCC-UCGCu -3'
miRNA:   3'- -CGGAGCUGGAu---GUGGCUu---CGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 36865 0.76 0.213203
Target:  5'- uGCC--GGCCUcgACAUCGAAGCCAUgCGCg -3'
miRNA:   3'- -CGGagCUGGA--UGUGGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 37628 0.76 0.213203
Target:  5'- aCCUCuacaagcuGGCCUACGCCaAAGCCuUCGCg -3'
miRNA:   3'- cGGAG--------CUGGAUGUGGcUUCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 21477 0.74 0.270521
Target:  5'- gGCCUCGACCaUGCGCUGAAacGUCAauUCGa -3'
miRNA:   3'- -CGGAGCUGG-AUGUGGCUU--CGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 33191 0.74 0.277604
Target:  5'- cCCUCGGCaCggcCACCGcuGGCUAUCGCg -3'
miRNA:   3'- cGGAGCUG-Gau-GUGGCu-UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 35361 0.73 0.306639
Target:  5'- aGCCUguucaaaCGACgCUGCcgcCCGAGGCCAUgCGCc -3'
miRNA:   3'- -CGGA-------GCUG-GAUGu--GGCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 18057 0.73 0.31841
Target:  5'- gGCCUuaccggcgcggggugCGugCUGggcCGCCGAAGCCggCGCg -3'
miRNA:   3'- -CGGA---------------GCugGAU---GUGGCUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 25293 0.73 0.326444
Target:  5'- uGCCUUGAggucgugcggccggcCCUGcCACCGgcGCuCGUCGCc -3'
miRNA:   3'- -CGGAGCU---------------GGAU-GUGGCuuCG-GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.