Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26517 | 3' | -54.2 | NC_005357.1 | + | 7771 | 0.71 | 0.450112 |
Target: 5'- aCCggcgCGAUCUGCGCCGgcGuCCAcccuUCGCc -3' miRNA: 3'- cGGa---GCUGGAUGUGGCuuC-GGU----AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33956 | 0.71 | 0.427403 |
Target: 5'- cGCgUCGGCUgcgGCAUCGcAGGCCAccucgacgccgacaUCGCg -3' miRNA: 3'- -CGgAGCUGGa--UGUGGC-UUCGGU--------------AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 25293 | 0.73 | 0.326444 |
Target: 5'- uGCCUUGAggucgugcggccggcCCUGcCACCGgcGCuCGUCGCc -3' miRNA: 3'- -CGGAGCU---------------GGAU-GUGGCuuCG-GUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 18057 | 0.73 | 0.31841 |
Target: 5'- gGCCUuaccggcgcggggugCGugCUGggcCGCCGAAGCCggCGCg -3' miRNA: 3'- -CGGA---------------GCugGAU---GUGGCUUCGGuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 35361 | 0.73 | 0.306639 |
Target: 5'- aGCCUguucaaaCGACgCUGCcgcCCGAGGCCAUgCGCc -3' miRNA: 3'- -CGGA-------GCUG-GAUGu--GGCUUCGGUA-GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33191 | 0.74 | 0.277604 |
Target: 5'- cCCUCGGCaCggcCACCGcuGGCUAUCGCg -3' miRNA: 3'- cGGAGCUG-Gau-GUGGCu-UCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 21477 | 0.74 | 0.270521 |
Target: 5'- gGCCUCGACCaUGCGCUGAAacGUCAauUCGa -3' miRNA: 3'- -CGGAGCUGG-AUGUGGCUU--CGGU--AGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 37628 | 0.76 | 0.213203 |
Target: 5'- aCCUCuacaagcuGGCCUACGCCaAAGCCuUCGCg -3' miRNA: 3'- cGGAG--------CUGGAUGUGGcUUCGGuAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 36865 | 0.76 | 0.213203 |
Target: 5'- uGCC--GGCCUcgACAUCGAAGCCAUgCGCg -3' miRNA: 3'- -CGGagCUGGA--UGUGGCUUCGGUA-GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 23225 | 0.79 | 0.140869 |
Target: 5'- gGCCUCGGCCUcggcCACCGAccgcGCC-UCGCu -3' miRNA: 3'- -CGGAGCUGGAu---GUGGCUu---CGGuAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 38399 | 0.73 | 0.339609 |
Target: 5'- cGCCgCGGCCgGCuuUGAAGCCuAUCGCu -3' miRNA: 3'- -CGGaGCUGGaUGugGCUUCGG-UAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 13996 | 0.73 | 0.351441 |
Target: 5'- gGCCUCGugCUGCACagcuugaccacggaaCGAGGUCAggaugUCGUu -3' miRNA: 3'- -CGGAGCugGAUGUG---------------GCUUCGGU-----AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 34618 | 0.71 | 0.420627 |
Target: 5'- cGCCUCGACCauauCAgCGAGugggacauGCcCAUCGCc -3' miRNA: 3'- -CGGAGCUGGau--GUgGCUU--------CG-GUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 30138 | 0.71 | 0.420627 |
Target: 5'- cGCCgcCGGCCUGCACCGcgucGGaCAUCaGCg -3' miRNA: 3'- -CGGa-GCUGGAUGUGGCu---UCgGUAG-CG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 7708 | 0.71 | 0.405386 |
Target: 5'- cCCUCGaagugaucccacaccGCCUGCACCGcuuGCCAUuccugCGCa -3' miRNA: 3'- cGGAGC---------------UGGAUGUGGCuu-CGGUA-----GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 7641 | 0.72 | 0.392339 |
Target: 5'- cGgCUCGACCcACGCCGGcuccuuGCCGUacaCGCg -3' miRNA: 3'- -CgGAGCUGGaUGUGGCUu-----CGGUA---GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 28545 | 0.72 | 0.383188 |
Target: 5'- gGCa-CGACCuUGCgGCCGccGGCCAUCGCg -3' miRNA: 3'- -CGgaGCUGG-AUG-UGGCu-UCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 491 | 0.72 | 0.383188 |
Target: 5'- uGCCUCGGCagcauaCUGCGCCGcGGCgGcUUGCa -3' miRNA: 3'- -CGGAGCUG------GAUGUGGCuUCGgU-AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 37774 | 0.72 | 0.356601 |
Target: 5'- gGCaUCGACCUugACgCGAuGGCCGaCGCa -3' miRNA: 3'- -CGgAGCUGGAugUG-GCU-UCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 28444 | 0.72 | 0.356601 |
Target: 5'- aGCCgUCGAUUUccgGCACguacaUGAGGCCGUCGCc -3' miRNA: 3'- -CGG-AGCUGGA---UGUG-----GCUUCGGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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