miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 33956 0.71 0.427403
Target:  5'- cGCgUCGGCUgcgGCAUCGcAGGCCAccucgacgccgacaUCGCg -3'
miRNA:   3'- -CGgAGCUGGa--UGUGGC-UUCGGU--------------AGCG- -5'
26517 3' -54.2 NC_005357.1 + 7771 0.71 0.450112
Target:  5'- aCCggcgCGAUCUGCGCCGgcGuCCAcccuUCGCc -3'
miRNA:   3'- cGGa---GCUGGAUGUGGCuuC-GGU----AGCG- -5'
26517 3' -54.2 NC_005357.1 + 23555 0.69 0.512264
Target:  5'- gGCCUCGGCCgACAUCGccGGCaggUGCg -3'
miRNA:   3'- -CGGAGCUGGaUGUGGCu-UCGguaGCG- -5'
26517 3' -54.2 NC_005357.1 + 29032 0.69 0.520827
Target:  5'- cGCUUCGGCCaggucgauaccCACCGGcggcucguaGGCCAUCaGCg -3'
miRNA:   3'- -CGGAGCUGGau---------GUGGCU---------UCGGUAG-CG- -5'
26517 3' -54.2 NC_005357.1 + 30445 0.69 0.521902
Target:  5'- gGCCUCGcccugaaucaguuGCCaggggGCGCCG--GUCAUCGCg -3'
miRNA:   3'- -CGGAGC-------------UGGa----UGUGGCuuCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 10710 0.69 0.522977
Target:  5'- gGCCUCGGCCgAUugCuuGAAugcGUCGUCGCc -3'
miRNA:   3'- -CGGAGCUGGaUGugG--CUU---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11562 0.69 0.533775
Target:  5'- uGCC-CG-CCgguCAUCGAAGCCAUgcCGCc -3'
miRNA:   3'- -CGGaGCuGGau-GUGGCUUCGGUA--GCG- -5'
26517 3' -54.2 NC_005357.1 + 41793 0.69 0.533775
Target:  5'- cGCCU-GACCcguucacccGCGCCGAGGCUgaggccaucAUCGCc -3'
miRNA:   3'- -CGGAgCUGGa--------UGUGGCUUCGG---------UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18384 0.69 0.544651
Target:  5'- gGCCUUG-CCgaugGCGCCGGuggcGGCCAcgUCGg -3'
miRNA:   3'- -CGGAGCuGGa---UGUGGCU----UCGGU--AGCg -5'
26517 3' -54.2 NC_005357.1 + 26027 0.69 0.544651
Target:  5'- uCCUCGGCgaugGCAUCaAAGCCcgCGCg -3'
miRNA:   3'- cGGAGCUGga--UGUGGcUUCGGuaGCG- -5'
26517 3' -54.2 NC_005357.1 + 3777 0.69 0.512264
Target:  5'- aGCCUCGGUCgu-GCCGAAaGCCAgCGCc -3'
miRNA:   3'- -CGGAGCUGGaugUGGCUU-CGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 37132 0.69 0.511198
Target:  5'- gGCCUCGACCUGCcagacaugcagcaAUCGAcGCUGgaacgaCGCa -3'
miRNA:   3'- -CGGAGCUGGAUG-------------UGGCUuCGGUa-----GCG- -5'
26517 3' -54.2 NC_005357.1 + 20471 0.71 0.450112
Target:  5'- cCUUCGGCgaAgGCCauAGCCAUCGCg -3'
miRNA:   3'- cGGAGCUGgaUgUGGcuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 31438 0.71 0.450112
Target:  5'- cGCCaCGAUCUGCGgCGuGGUCAUCGg -3'
miRNA:   3'- -CGGaGCUGGAUGUgGCuUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 10324 0.7 0.460191
Target:  5'- aGUUUCG-CC-AgGCCGuAGCCGUCGCu -3'
miRNA:   3'- -CGGAGCuGGaUgUGGCuUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 11139 0.7 0.460191
Target:  5'- aGCaguUCGGCCUGCugCuGGGCCGccugCGCa -3'
miRNA:   3'- -CGg--AGCUGGAUGugGcUUCGGUa---GCG- -5'
26517 3' -54.2 NC_005357.1 + 27118 0.7 0.4807
Target:  5'- uGCCUUaGCCUGCaaaGCUGAcGCCG-CGCg -3'
miRNA:   3'- -CGGAGcUGGAUG---UGGCUuCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 24483 0.7 0.49112
Target:  5'- -gCUUGGCCUGCGCCagGAAGUCGUagggGCu -3'
miRNA:   3'- cgGAGCUGGAUGUGG--CUUCGGUAg---CG- -5'
26517 3' -54.2 NC_005357.1 + 25815 0.7 0.501643
Target:  5'- uCgUUGAUCUGCACCGGGccGCCGUUGg -3'
miRNA:   3'- cGgAGCUGGAUGUGGCUU--CGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 17444 0.7 0.501643
Target:  5'- gGCCcCG-CCaGCAUCGAGGCCAggUGCc -3'
miRNA:   3'- -CGGaGCuGGaUGUGGCUUCGGUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.