miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26517 3' -54.2 NC_005357.1 + 16231 1.13 0.00051
Target:  5'- cGCCUCGACCUACACCGAAGCCAUCGCc -3'
miRNA:   3'- -CGGAGCUGGAUGUGGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 24753 0.71 0.430327
Target:  5'- cGCUUCG-CCUACgcccagcccGCCGAcGCCAUCa- -3'
miRNA:   3'- -CGGAGCuGGAUG---------UGGCUuCGGUAGcg -5'
26517 3' -54.2 NC_005357.1 + 476 0.71 0.431304
Target:  5'- cGCUUCGACaaucgccaguuucGCGCUGAacaaguccacguugGGCCAUCGCu -3'
miRNA:   3'- -CGGAGCUGga-----------UGUGGCU--------------UCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 30399 0.66 0.743669
Target:  5'- cGCUgggcaaGACCU-CGCCGGccacGGCCG-CGCu -3'
miRNA:   3'- -CGGag----CUGGAuGUGGCU----UCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 17859 0.73 0.307413
Target:  5'- gGCC-CGACCgugGCCGGccucGCCAUCGCc -3'
miRNA:   3'- -CGGaGCUGGaugUGGCUu---CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 5771 0.73 0.313661
Target:  5'- cGCCagGGCCUugACCaucgugucccGCCAUCGCg -3'
miRNA:   3'- -CGGagCUGGAugUGGcuu-------CGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 34212 0.73 0.331336
Target:  5'- gGCCgcCGACCaGCGCgacuaCGAGGCCGUgCGCg -3'
miRNA:   3'- -CGGa-GCUGGaUGUG-----GCUUCGGUA-GCG- -5'
26517 3' -54.2 NC_005357.1 + 11337 0.73 0.348031
Target:  5'- cGCC--GGCCUGCACCGAGGUgAgcaGCg -3'
miRNA:   3'- -CGGagCUGGAUGUGGCUUCGgUag-CG- -5'
26517 3' -54.2 NC_005357.1 + 4185 0.72 0.374181
Target:  5'- cGCCUCGAuggcgggcaUgUugGCCGcGAGCaCGUCGCg -3'
miRNA:   3'- -CGGAGCU---------GgAugUGGC-UUCG-GUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 18238 0.71 0.428376
Target:  5'- cGCCUaCGugCUcgcgcucauggacACGCCGAagcgcgcAGCCGUCGa -3'
miRNA:   3'- -CGGA-GCugGA-------------UGUGGCU-------UCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 20738 0.71 0.411061
Target:  5'- aCCUCGACCUgucGCACCuucuGGCUgacAUCGUg -3'
miRNA:   3'- cGGAGCUGGA---UGUGGcu--UCGG---UAGCG- -5'
26517 3' -54.2 NC_005357.1 + 17722 0.72 0.374181
Target:  5'- gGCC-CGACCgacugGCACCGAuggacAGCCugggCGUg -3'
miRNA:   3'- -CGGaGCUGGa----UGUGGCU-----UCGGua--GCG- -5'
26517 3' -54.2 NC_005357.1 + 18866 0.79 0.144894
Target:  5'- cGCC-CGcACCUGCcggcgaugucgGCCGAGGCCAUCGa -3'
miRNA:   3'- -CGGaGC-UGGAUG-----------UGGCUUCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 9587 0.71 0.411061
Target:  5'- cGUCUgCGGCCa--GgCGAAGCCGUUGCg -3'
miRNA:   3'- -CGGA-GCUGGaugUgGCUUCGGUAGCG- -5'
26517 3' -54.2 NC_005357.1 + 24032 0.77 0.196552
Target:  5'- cGCCgacgUGGCCgcCACCGgcGCCAUCGg -3'
miRNA:   3'- -CGGa---GCUGGauGUGGCuuCGGUAGCg -5'
26517 3' -54.2 NC_005357.1 + 7449 0.72 0.356601
Target:  5'- gGCUUCGGCCUuCGCgCGAauGGCC-UUGCa -3'
miRNA:   3'- -CGGAGCUGGAuGUG-GCU--UCGGuAGCG- -5'
26517 3' -54.2 NC_005357.1 + 36808 0.71 0.411061
Target:  5'- aCCUCG-CCaACAUCGAcGCCGUgGCu -3'
miRNA:   3'- cGGAGCuGGaUGUGGCUuCGGUAgCG- -5'
26517 3' -54.2 NC_005357.1 + 33569 0.71 0.430327
Target:  5'- cGCUUCGug--GCgACCGAGGCCAaCGCg -3'
miRNA:   3'- -CGGAGCuggaUG-UGGCUUCGGUaGCG- -5'
26517 3' -54.2 NC_005357.1 + 36045 0.74 0.284834
Target:  5'- gGCCggcCGGCCUGCGCCuGAuugccgacgugGGCCGguUCGCc -3'
miRNA:   3'- -CGGa--GCUGGAUGUGG-CU-----------UCGGU--AGCG- -5'
26517 3' -54.2 NC_005357.1 + 12446 0.73 0.331336
Target:  5'- gGCCcguUCGACggCUGCAUCcAGGCCGUCGUg -3'
miRNA:   3'- -CGG---AGCUG--GAUGUGGcUUCGGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.