Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26517 | 3' | -54.2 | NC_005357.1 | + | 13392 | 0.71 | 0.450112 |
Target: 5'- cGCCgguggguaUCGACCUG-GCCGAAGCgCggCGCc -3' miRNA: 3'- -CGG--------AGCUGGAUgUGGCUUCG-GuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 476 | 0.71 | 0.431304 |
Target: 5'- cGCUUCGACaaucgccaguuucGCGCUGAacaaguccacguugGGCCAUCGCu -3' miRNA: 3'- -CGGAGCUGga-----------UGUGGCU--------------UCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17722 | 0.72 | 0.374181 |
Target: 5'- gGCC-CGACCgacugGCACCGAuggacAGCCugggCGUg -3' miRNA: 3'- -CGGaGCUGGa----UGUGGCU-----UCGGua--GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 36045 | 0.74 | 0.284834 |
Target: 5'- gGCCggcCGGCCUGCGCCuGAuugccgacgugGGCCGguUCGCc -3' miRNA: 3'- -CGGa--GCUGGAUGUGG-CU-----------UCGGU--AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 30276 | 0.68 | 0.588785 |
Target: 5'- aCCcCGacGCCUACGCgGAAGCgCAgCGCg -3' miRNA: 3'- cGGaGC--UGGAUGUGgCUUCG-GUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 8463 | 0.69 | 0.512264 |
Target: 5'- cGUCgaggUGGCCUGCgauGCCGcAGCCGaCGCg -3' miRNA: 3'- -CGGa---GCUGGAUG---UGGCuUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 24753 | 0.71 | 0.430327 |
Target: 5'- cGCUUCG-CCUACgcccagcccGCCGAcGCCAUCa- -3' miRNA: 3'- -CGGAGCuGGAUG---------UGGCUuCGGUAGcg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 24032 | 0.77 | 0.196552 |
Target: 5'- cGCCgacgUGGCCgcCACCGgcGCCAUCGg -3' miRNA: 3'- -CGGa---GCUGGauGUGGCuuCGGUAGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 6283 | 0.7 | 0.501643 |
Target: 5'- cGCUUUGGCUgggGCGCCGggGCUuaucuccggUGCg -3' miRNA: 3'- -CGGAGCUGGa--UGUGGCuuCGGua-------GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 18866 | 0.79 | 0.144894 |
Target: 5'- cGCC-CGcACCUGCcggcgaugucgGCCGAGGCCAUCGa -3' miRNA: 3'- -CGGaGC-UGGAUG-----------UGGCUUCGGUAGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33569 | 0.71 | 0.430327 |
Target: 5'- cGCUUCGug--GCgACCGAGGCCAaCGCg -3' miRNA: 3'- -CGGAGCuggaUG-UGGCUUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 37120 | 0.7 | 0.460191 |
Target: 5'- gGCCggCGACCUggaaaAUAUCGAcGCCGUgGCc -3' miRNA: 3'- -CGGa-GCUGGA-----UGUGGCUuCGGUAgCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 9587 | 0.71 | 0.411061 |
Target: 5'- cGUCUgCGGCCa--GgCGAAGCCGUUGCg -3' miRNA: 3'- -CGGA-GCUGGaugUgGCUUCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 4185 | 0.72 | 0.374181 |
Target: 5'- cGCCUCGAuggcgggcaUgUugGCCGcGAGCaCGUCGCg -3' miRNA: 3'- -CGGAGCU---------GgAugUGGC-UUCG-GUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 34212 | 0.73 | 0.331336 |
Target: 5'- gGCCgcCGACCaGCGCgacuaCGAGGCCGUgCGCg -3' miRNA: 3'- -CGGa-GCUGGaUGUG-----GCUUCGGUA-GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17859 | 0.73 | 0.307413 |
Target: 5'- gGCC-CGACCgugGCCGGccucGCCAUCGCc -3' miRNA: 3'- -CGGaGCUGGaugUGGCUu---CGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 38397 | 0.68 | 0.599934 |
Target: 5'- uGCgCUCGACCcgcgcggcaugACGCUGGuGGCCggCGCg -3' miRNA: 3'- -CG-GAGCUGGa----------UGUGGCU-UCGGuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33796 | 0.68 | 0.588785 |
Target: 5'- gGCCggCGACCUcgcCACCGcagcGGCCGagaagCGCa -3' miRNA: 3'- -CGGa-GCUGGAu--GUGGCu---UCGGUa----GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17974 | 0.69 | 0.566608 |
Target: 5'- gGUCgUCGGCgUcaauguCGCCGAGGCCG-CGCg -3' miRNA: 3'- -CGG-AGCUGgAu-----GUGGCUUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 25524 | 0.69 | 0.522977 |
Target: 5'- cGCCaaucCCUACGCCGAAGCCGa--- -3' miRNA: 3'- -CGGagcuGGAUGUGGCUUCGGUagcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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