Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26517 | 3' | -54.2 | NC_005357.1 | + | 11413 | 0.68 | 0.588785 |
Target: 5'- uGCCUCGGCCgGCAagcCCGuGGaCAggUCGCg -3' miRNA: 3'- -CGGAGCUGGaUGU---GGCuUCgGU--AGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 24753 | 0.71 | 0.430327 |
Target: 5'- cGCUUCG-CCUACgcccagcccGCCGAcGCCAUCa- -3' miRNA: 3'- -CGGAGCuGGAUG---------UGGCUuCGGUAGcg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 24032 | 0.77 | 0.196552 |
Target: 5'- cGCCgacgUGGCCgcCACCGgcGCCAUCGg -3' miRNA: 3'- -CGGa---GCUGGauGUGGCuuCGGUAGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 38177 | 0.68 | 0.577673 |
Target: 5'- cGCUgaCGGCCgGCACCGAcuacGCCAUCu- -3' miRNA: 3'- -CGGa-GCUGGaUGUGGCUu---CGGUAGcg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 18866 | 0.79 | 0.144894 |
Target: 5'- cGCC-CGcACCUGCcggcgaugucgGCCGAGGCCAUCGa -3' miRNA: 3'- -CGGaGC-UGGAUG-----------UGGCUUCGGUAGCg -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 26486 | 0.66 | 0.689308 |
Target: 5'- gGCCUacgCGAag-GCGCCGcAGCCuAUCGUg -3' miRNA: 3'- -CGGA---GCUggaUGUGGCuUCGG-UAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17859 | 0.73 | 0.307413 |
Target: 5'- gGCC-CGACCgugGCCGGccucGCCAUCGCc -3' miRNA: 3'- -CGGaGCUGGaugUGGCUu---CGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 23393 | 0.67 | 0.678218 |
Target: 5'- cGCCggCGGCCgcUACCaGGGCUAcCGCa -3' miRNA: 3'- -CGGa-GCUGGauGUGGcUUCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 41785 | 0.67 | 0.667082 |
Target: 5'- aGCCUUGggcACCgacucgACGCCGGAcGCCGUguccacggCGCu -3' miRNA: 3'- -CGGAGC---UGGa-----UGUGGCUU-CGGUA--------GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 32553 | 0.67 | 0.655912 |
Target: 5'- cGCCU-GGCCgagaagcagcGCGCCGguGCCA-CGCu -3' miRNA: 3'- -CGGAgCUGGa---------UGUGGCuuCGGUaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 29270 | 0.68 | 0.622309 |
Target: 5'- gGCCgacacUGGCCgACAUCGAGGCgcaGUUGCa -3' miRNA: 3'- -CGGa----GCUGGaUGUGGCUUCGg--UAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 38397 | 0.68 | 0.599934 |
Target: 5'- uGCgCUCGACCcgcgcggcaugACGCUGGuGGCCggCGCg -3' miRNA: 3'- -CG-GAGCUGGa----------UGUGGCU-UCGGuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 33796 | 0.68 | 0.588785 |
Target: 5'- gGCCggCGACCUcgcCACCGcagcGGCCGagaagCGCa -3' miRNA: 3'- -CGGa-GCUGGAu--GUGGCu---UCGGUa----GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 17584 | 0.69 | 0.544651 |
Target: 5'- aUCUCGucacCCUGCAaucguugcCCG-AGCCAUUGCg -3' miRNA: 3'- cGGAGCu---GGAUGU--------GGCuUCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 6283 | 0.7 | 0.501643 |
Target: 5'- cGCUUUGGCUgggGCGCCGggGCUuaucuccggUGCg -3' miRNA: 3'- -CGGAGCUGGa--UGUGGCuuCGGua-------GCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 13392 | 0.71 | 0.450112 |
Target: 5'- cGCCgguggguaUCGACCUG-GCCGAAGCgCggCGCc -3' miRNA: 3'- -CGG--------AGCUGGAUgUGGCUUCG-GuaGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 476 | 0.71 | 0.431304 |
Target: 5'- cGCUUCGACaaucgccaguuucGCGCUGAacaaguccacguugGGCCAUCGCu -3' miRNA: 3'- -CGGAGCUGga-----------UGUGGCU--------------UCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 9587 | 0.71 | 0.411061 |
Target: 5'- cGUCUgCGGCCa--GgCGAAGCCGUUGCg -3' miRNA: 3'- -CGGA-GCUGGaugUgGCUUCGGUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 4185 | 0.72 | 0.374181 |
Target: 5'- cGCCUCGAuggcgggcaUgUugGCCGcGAGCaCGUCGCg -3' miRNA: 3'- -CGGAGCU---------GgAugUGGC-UUCG-GUAGCG- -5' |
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26517 | 3' | -54.2 | NC_005357.1 | + | 34212 | 0.73 | 0.331336 |
Target: 5'- gGCCgcCGACCaGCGCgacuaCGAGGCCGUgCGCg -3' miRNA: 3'- -CGGa-GCUGGaUGUG-----GCUUCGGUA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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