Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 40960 | 0.68 | 0.485482 |
Target: 5'- -cCGGCC-UGCcaggaggCCGCCGACCGc-- -3' miRNA: 3'- caGUCGGaACGaa-----GGCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 41071 | 0.69 | 0.453942 |
Target: 5'- gGUC-GCCggaUGCgcaaggCCGCCGACCAc-- -3' miRNA: 3'- -CAGuCGGa--ACGaa----GGCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 41388 | 0.68 | 0.507078 |
Target: 5'- -gCGGCgacaUGCUgCCGCCGGCCGUg- -3' miRNA: 3'- caGUCGga--ACGAaGGCGGCUGGUAau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home