Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 340 | 0.66 | 0.654284 |
Target: 5'- gGUCGuGCCacacgUGCU--CGCCGACCAUc- -3' miRNA: 3'- -CAGU-CGGa----ACGAagGCGGCUGGUAau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 8831 | 0.66 | 0.631294 |
Target: 5'- uGUCGGCCUUGauaccgUCCucGCCGACg---- -3' miRNA: 3'- -CAGUCGGAACga----AGG--CGGCUGguaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 16745 | 0.67 | 0.585411 |
Target: 5'- -gCAGCgUUGCcgaaaUCCGCCGGCUg--- -3' miRNA: 3'- caGUCGgAACGa----AGGCGGCUGGuaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 4009 | 0.67 | 0.561553 |
Target: 5'- gGUCAGuCCUUccgauagcgauagGCUUCaaaGCCGGCCGc-- -3' miRNA: 3'- -CAGUC-GGAA-------------CGAAGg--CGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 41388 | 0.68 | 0.507078 |
Target: 5'- -gCGGCgacaUGCUgCCGCCGGCCGUg- -3' miRNA: 3'- caGUCGga--ACGAaGGCGGCUGGUAau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 40960 | 0.68 | 0.485482 |
Target: 5'- -cCGGCC-UGCcaggaggCCGCCGACCGc-- -3' miRNA: 3'- caGUCGGaACGaa-----GGCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 41071 | 0.69 | 0.453942 |
Target: 5'- gGUC-GCCggaUGCgcaaggCCGCCGACCAc-- -3' miRNA: 3'- -CAGuCGGa--ACGaa----GGCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 15559 | 1.07 | 0.000996 |
Target: 5'- cGUCAGCCUUGCUUCCGCCGACCAUUAc -3' miRNA: 3'- -CAGUCGGAACGAAGGCGGCUGGUAAU- -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 34185 | 0.66 | 0.643944 |
Target: 5'- --gGGCCgcuugaagcgcaagcUGCUgacggCCGCCGACCAg-- -3' miRNA: 3'- cagUCGGa--------------ACGAa----GGCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 27276 | 0.66 | 0.654284 |
Target: 5'- aUCAGCCgucgcccuggGCgcaUCCGCCG-CCAg-- -3' miRNA: 3'- cAGUCGGaa--------CGa--AGGCGGCuGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 23008 | 0.67 | 0.596843 |
Target: 5'- gGUCGGCCUgcUGCUg-CGCCuGCUGUUGg -3' miRNA: 3'- -CAGUCGGA--ACGAagGCGGcUGGUAAU- -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 22246 | 0.73 | 0.276573 |
Target: 5'- uGUCGGCCgcgaugGCguaUUCGCCGGCCGUc- -3' miRNA: 3'- -CAGUCGGaa----CGa--AGGCGGCUGGUAau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 25526 | 0.7 | 0.394406 |
Target: 5'- gGUCGGUUUUGCcgCCGCCGGCa---- -3' miRNA: 3'- -CAGUCGGAACGaaGGCGGCUGguaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 14618 | 0.68 | 0.496227 |
Target: 5'- cGUCGGCUUccaUGCUUCCGgCG-CCGg-- -3' miRNA: 3'- -CAGUCGGA---ACGAAGGCgGCuGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 732 | 0.68 | 0.529072 |
Target: 5'- -gCGGCUUUGCcgacaaCGCCGGCCAg-- -3' miRNA: 3'- caGUCGGAACGaag---GCGGCUGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 4341 | 0.68 | 0.5402 |
Target: 5'- -cCAGCCUUGa---UGCUGGCCGUUGc -3' miRNA: 3'- caGUCGGAACgaagGCGGCUGGUAAU- -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 14133 | 0.67 | 0.574021 |
Target: 5'- cGUCGGCCagcgGCUUgCCuuCCGGCCGUUc -3' miRNA: 3'- -CAGUCGGaa--CGAA-GGc-GGCUGGUAAu -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 11144 | 0.66 | 0.654284 |
Target: 5'- uUCGGCCUgcUGCUgggCCGCCugcGCaCGUUGc -3' miRNA: 3'- cAGUCGGA--ACGAa--GGCGGc--UG-GUAAU- -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 10531 | 0.66 | 0.642794 |
Target: 5'- -cCGGCCacGCuUUCCGCCG-CCAc-- -3' miRNA: 3'- caGUCGGaaCG-AAGGCGGCuGGUaau -5' |
|||||||
26518 | 3' | -54.4 | NC_005357.1 | + | 32540 | 0.67 | 0.585411 |
Target: 5'- -cCGGCCaggaUGCUgCCGCCGGCgAUg- -3' miRNA: 3'- caGUCGGa---ACGAaGGCGGCUGgUAau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home