miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26518 5' -63.7 NC_005357.1 + 25602 0.66 0.238697
Target:  5'- cCCAggcagUGGcaaccacGGCGGCGCGGUC-GCCAGc -3'
miRNA:   3'- aGGUa----GCC-------CCGCCGCGUCGGaCGGUU- -5'
26518 5' -63.7 NC_005357.1 + 14715 0.66 0.232658
Target:  5'- gUCCAUgacCGGcGGCGagccgcugccggcGCGCGGCCUGUa-- -3'
miRNA:   3'- -AGGUA---GCC-CCGC-------------CGCGUCGGACGguu -5'
26518 5' -63.7 NC_005357.1 + 28391 0.66 0.215871
Target:  5'- uUCCAguUCGacgccGGCGGCGCGGC--GCCAGu -3'
miRNA:   3'- -AGGU--AGCc----CCGCCGCGUCGgaCGGUU- -5'
26518 5' -63.7 NC_005357.1 + 18278 0.66 0.210328
Target:  5'- gCCGUCGaGGCGcugggccaggcGCGCAGCCgGCUGGa -3'
miRNA:   3'- aGGUAGCcCCGC-----------CGCGUCGGaCGGUU- -5'
26518 5' -63.7 NC_005357.1 + 31902 0.67 0.189367
Target:  5'- gCCAUCGaGGccgagugccuGCGGCGUuucgaGGCCUGCuCGAc -3'
miRNA:   3'- aGGUAGC-CC----------CGCCGCG-----UCGGACG-GUU- -5'
26518 5' -63.7 NC_005357.1 + 26311 0.67 0.184422
Target:  5'- -aCGUCGGGGCcaccgacGUGCAGCCgGUCGu -3'
miRNA:   3'- agGUAGCCCCGc------CGCGUCGGaCGGUu -5'
26518 5' -63.7 NC_005357.1 + 12004 0.67 0.179591
Target:  5'- uUCCAcgUCGGccaGCaGCGCGGCCgugGCCGg -3'
miRNA:   3'- -AGGU--AGCCc--CGcCGCGUCGGa--CGGUu -5'
26518 5' -63.7 NC_005357.1 + 18063 0.67 0.174873
Target:  5'- aCCGgcgCGGGGUGcGUGCugGGCC-GCCGAa -3'
miRNA:   3'- aGGUa--GCCCCGC-CGCG--UCGGaCGGUU- -5'
26518 5' -63.7 NC_005357.1 + 16727 0.68 0.170265
Target:  5'- gCCG-CGGGGCuGGUaugaGCAGCgUUGCCGAa -3'
miRNA:   3'- aGGUaGCCCCG-CCG----CGUCG-GACGGUU- -5'
26518 5' -63.7 NC_005357.1 + 24297 0.68 0.170265
Target:  5'- -aCGUgGGGGCGGUgaggucggcgaGCAGCCgcggGUCAGg -3'
miRNA:   3'- agGUAgCCCCGCCG-----------CGUCGGa---CGGUU- -5'
26518 5' -63.7 NC_005357.1 + 33754 0.68 0.170265
Target:  5'- aCCu---GGGCGGCGCAGCa-GCCGc -3'
miRNA:   3'- aGGuagcCCCGCCGCGUCGgaCGGUu -5'
26518 5' -63.7 NC_005357.1 + 39530 0.68 0.165767
Target:  5'- -aCAUCGGGGC-GCGCGGCgucugUGCCc- -3'
miRNA:   3'- agGUAGCCCCGcCGCGUCGg----ACGGuu -5'
26518 5' -63.7 NC_005357.1 + 28830 0.69 0.144841
Target:  5'- gUCGUCGGGuuGCGGC-CGGaCUUGCCGAa -3'
miRNA:   3'- aGGUAGCCC--CGCCGcGUC-GGACGGUU- -5'
26518 5' -63.7 NC_005357.1 + 5623 0.7 0.116334
Target:  5'- uUUCGcgCGuGGcGCGGCGCAGCUUGCUg- -3'
miRNA:   3'- -AGGUa-GC-CC-CGCCGCGUCGGACGGuu -5'
26518 5' -63.7 NC_005357.1 + 7686 0.71 0.095772
Target:  5'- gUCGUCGGgcuugaccucGGCGGC-CGGCUUGCCGAu -3'
miRNA:   3'- aGGUAGCC----------CCGCCGcGUCGGACGGUU- -5'
26518 5' -63.7 NC_005357.1 + 363 0.72 0.07436
Target:  5'- aCCAUCcGGGUGuGCuuGGCCUGCCGAu -3'
miRNA:   3'- aGGUAGcCCCGC-CGcgUCGGACGGUU- -5'
26518 5' -63.7 NC_005357.1 + 28134 0.73 0.064531
Target:  5'- gCCugGUC-GGGCGGCaGCAGCUUGCCGGu -3'
miRNA:   3'- aGG--UAGcCCCGCCG-CGUCGGACGGUU- -5'
26518 5' -63.7 NC_005357.1 + 15599 1.06 0.000152
Target:  5'- cUCCAUCGGGGCGGCGCAGCCUGCCAAa -3'
miRNA:   3'- -AGGUAGCCCCGCCGCGUCGGACGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.