miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26519 3' -68.6 NC_005357.1 + 8414 0.66 0.156241
Target:  5'- gGCCAGGGCCgUGCgcuugucuacGGCCuugaggcuuugGCCcuuGCGCa -3'
miRNA:   3'- gCGGUCCCGG-ACG----------CCGG-----------CGGcc-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 17472 0.66 0.152277
Target:  5'- aCGCCAGGGCCUGCa--CGaacaGcGGCGa -3'
miRNA:   3'- -GCGGUCCCGGACGccgGCgg--C-CCGCg -5'
26519 3' -68.6 NC_005357.1 + 10927 0.66 0.151886
Target:  5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3'
miRNA:   3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5'
26519 3' -68.6 NC_005357.1 + 5770 0.66 0.148405
Target:  5'- gCGCCAGGGCCUugaccaucGUGucCCGCCaucgcGGCaGCg -3'
miRNA:   3'- -GCGGUCCCGGA--------CGCc-GGCGGc----CCG-CG- -5'
26519 3' -68.6 NC_005357.1 + 32348 0.66 0.148405
Target:  5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3'
miRNA:   3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5'
26519 3' -68.6 NC_005357.1 + 9214 0.66 0.144622
Target:  5'- aGCCAGcgguGGCCgugccgcgauagccaGCGGUgGCCgugccgaGGGCGCc -3'
miRNA:   3'- gCGGUC----CCGGa--------------CGCCGgCGG-------CCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 41378 0.66 0.144622
Target:  5'- aCGCCGGuucgcGGCgacaUGCuGCCGCCGGcCGUg -3'
miRNA:   3'- -GCGGUC-----CCGg---ACGcCGGCGGCCcGCG- -5'
26519 3' -68.6 NC_005357.1 + 17991 0.66 0.143134
Target:  5'- uCGCCGaGGCCgcgcGCGGCaccgacaaaucggGCCGGcuGCGCu -3'
miRNA:   3'- -GCGGUcCCGGa---CGCCGg------------CGGCC--CGCG- -5'
26519 3' -68.6 NC_005357.1 + 16838 0.66 0.140928
Target:  5'- uGCCAcuGCCUG-GGCCGCagacCGcGGCGUa -3'
miRNA:   3'- gCGGUccCGGACgCCGGCG----GC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 8128 0.66 0.140928
Target:  5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3'
miRNA:   3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5'
26519 3' -68.6 NC_005357.1 + 22207 0.66 0.140928
Target:  5'- -cCCAaGGCCaacaGcCGGCCG-CGGGCGCu -3'
miRNA:   3'- gcGGUcCCGGa---C-GCCGGCgGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 17227 0.66 0.140928
Target:  5'- aGCC-GGGCCaGCGGUCG-CGcGUGCu -3'
miRNA:   3'- gCGGuCCCGGaCGCCGGCgGCcCGCG- -5'
26519 3' -68.6 NC_005357.1 + 29251 0.66 0.140563
Target:  5'- gGCCaAGGGCgCccagcGCGGCCGacacuggccgacaUCGaGGCGCa -3'
miRNA:   3'- gCGG-UCCCG-Ga----CGCCGGC-------------GGC-CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 13305 0.66 0.138393
Target:  5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3'
miRNA:   3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5'
26519 3' -68.6 NC_005357.1 + 31064 0.66 0.13732
Target:  5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3'
miRNA:   3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5'
26519 3' -68.6 NC_005357.1 + 1763 0.66 0.13732
Target:  5'- gGCC--GGCCUGCgccuGGCgCGUCGGGC-Cg -3'
miRNA:   3'- gCGGucCCGGACG----CCG-GCGGCCCGcG- -5'
26519 3' -68.6 NC_005357.1 + 13053 0.66 0.136964
Target:  5'- gCGCCgaguccgAGGGCUgggGCaaGGCCaCCGGcGCGUg -3'
miRNA:   3'- -GCGG-------UCCCGGa--CG--CCGGcGGCC-CGCG- -5'
26519 3' -68.6 NC_005357.1 + 30056 0.66 0.136254
Target:  5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 2726 0.67 0.130358
Target:  5'- gGCCGGacgcuugagcgcGGCCcgGC-GCUGCuCGGGCGUg -3'
miRNA:   3'- gCGGUC------------CCGGa-CGcCGGCG-GCCCGCG- -5'
26519 3' -68.6 NC_005357.1 + 28878 0.67 0.130358
Target:  5'- uCGCCGuGGGCaccgagucagGCGGCCGaCaguucGGCGCg -3'
miRNA:   3'- -GCGGU-CCCGga--------CGCCGGC-Ggc---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.