Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26519 | 3' | -68.6 | NC_005357.1 | + | 10328 | 0.67 | 0.117403 |
Target: 5'- uCGCCA-GGCCguaGCcGUCGCUGcGGCGUg -3' miRNA: 3'- -GCGGUcCCGGa--CGcCGGCGGC-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 17227 | 0.66 | 0.140928 |
Target: 5'- aGCC-GGGCCaGCGGUCG-CGcGUGCu -3' miRNA: 3'- gCGGuCCCGGaCGCCGGCgGCcCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 16838 | 0.66 | 0.140928 |
Target: 5'- uGCCAcuGCCUG-GGCCGCagacCGcGGCGUa -3' miRNA: 3'- gCGGUccCGGACgCCGGCG----GC-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 29251 | 0.66 | 0.140563 |
Target: 5'- gGCCaAGGGCgCccagcGCGGCCGacacuggccgacaUCGaGGCGCa -3' miRNA: 3'- gCGG-UCCCG-Ga----CGCCGGC-------------GGC-CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 22207 | 0.66 | 0.140928 |
Target: 5'- -cCCAaGGCCaacaGcCGGCCG-CGGGCGCu -3' miRNA: 3'- gcGGUcCCGGa---C-GCCGGCgGCCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 17991 | 0.66 | 0.143134 |
Target: 5'- uCGCCGaGGCCgcgcGCGGCaccgacaaaucggGCCGGcuGCGCu -3' miRNA: 3'- -GCGGUcCCGGa---CGCCGg------------CGGCC--CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 9214 | 0.66 | 0.144622 |
Target: 5'- aGCCAGcgguGGCCgugccgcgauagccaGCGGUgGCCgugccgaGGGCGCc -3' miRNA: 3'- gCGGUC----CCGGa--------------CGCCGgCGG-------CCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 41378 | 0.66 | 0.144622 |
Target: 5'- aCGCCGGuucgcGGCgacaUGCuGCCGCCGGcCGUg -3' miRNA: 3'- -GCGGUC-----CCGg---ACGcCGGCGGCCcGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 1763 | 0.66 | 0.13732 |
Target: 5'- gGCC--GGCCUGCgccuGGCgCGUCGGGC-Cg -3' miRNA: 3'- gCGGucCCGGACG----CCG-GCGGCCCGcG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 13053 | 0.66 | 0.136964 |
Target: 5'- gCGCCgaguccgAGGGCUgggGCaaGGCCaCCGGcGCGUg -3' miRNA: 3'- -GCGG-------UCCCGGa--CG--CCGGcGGCC-CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 8128 | 0.66 | 0.140928 |
Target: 5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3' miRNA: 3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 30056 | 0.66 | 0.136254 |
Target: 5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3' miRNA: 3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 31064 | 0.66 | 0.13732 |
Target: 5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3' miRNA: 3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 13305 | 0.66 | 0.138393 |
Target: 5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3' miRNA: 3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 32348 | 0.66 | 0.148405 |
Target: 5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3' miRNA: 3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 10927 | 0.66 | 0.151886 |
Target: 5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3' miRNA: 3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 17472 | 0.66 | 0.152277 |
Target: 5'- aCGCCAGGGCCUGCa--CGaacaGcGGCGa -3' miRNA: 3'- -GCGGUCCCGGACGccgGCgg--C-CCGCg -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 8414 | 0.66 | 0.156241 |
Target: 5'- gGCCAGGGCCgUGCgcuugucuacGGCCuugaggcuuugGCCcuuGCGCa -3' miRNA: 3'- gCGGUCCCGG-ACG----------CCGG-----------CGGcc-CGCG- -5' |
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26519 | 3' | -68.6 | NC_005357.1 | + | 5770 | 0.66 | 0.148405 |
Target: 5'- gCGCCAGGGCCUugaccaucGUGucCCGCCaucgcGGCaGCg -3' miRNA: 3'- -GCGGUCCCGGA--------CGCc-GGCGGc----CCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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